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(-) Description

Title :  STRUCTURE OF UBIX IN COMPLEX WITH OXIDISED FMN AND DIMETHYLALLYL MONOPHOSPHATE
 
Authors :  M. D. White, D. Leys
Date :  13 Apr 15  (Deposition) - 17 Jun 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (12x)
Keywords :  Prenyl Transferase, Flavin Binding, Ubix, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. White, K. A. Payne, K. Fisher, S. A. Marshall, D. Parker, N. J. Rattray, D. K. Trivedi, R. Goodacre, S. E. Rigby, N. S. Scrutton, S. Hay, D. Leys
Ubix Is A Flavin Prenyltransferase Required For Bacterial Ubiquinone Biosynthesis.
Nature V. 522 497 2015
PubMed-ID: 26083743  |  Reference-DOI: 10.1038/NATURE14559

(-) Compounds

Molecule 1 - PROBABLE AROMATIC ACID DECARBOXYLASE
    Chains: A
    EC Number: 4.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PA4019
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (12x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric Unit (4, 7)
No.NameCountTypeFull Name
14LR1Ligand/IonDIMETHYLALLYL MONOPHOSPHATE
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3K1Ligand/IonPOTASSIUM ION
4SCN4Ligand/IonTHIOCYANATE ION
Biological Unit 1 (3, 72)
No.NameCountTypeFull Name
14LR12Ligand/IonDIMETHYLALLYL MONOPHOSPHATE
2FMN12Ligand/IonFLAVIN MONONUCLEOTIDE
3K-1Ligand/IonPOTASSIUM ION
4SCN48Ligand/IonTHIOCYANATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:84 , ALA A:89 , SER A:90 , GLY A:91 , ARG A:122 , LYS A:129 , ARG A:139 , GLU A:140 , TYR A:169 , ARG A:185 , TRP A:200 , FMN A:302 , HOH A:435binding site for residue 4LR A 301
2AC2SOFTWARETHR A:12 , GLY A:13 , ALA A:14 , SER A:15 , SER A:39 , ALA A:41 , TRP A:84 , SER A:104 , THR A:105 , THR A:107 , CYS A:116 , ARG A:122 , ARG A:139 , GLU A:140 , 4LR A:301 , HOH A:434 , HOH A:450 , HOH A:463 , HOH A:466 , HOH A:469binding site for residue FMN A 302
3AC3SOFTWARESCN A:304binding site for residue SCN A 303
4AC4SOFTWAREASN A:96 , ALA A:97 , PRO A:133 , SCN A:303binding site for residue SCN A 304
5AC5SOFTWARETHR A:66 , GLU A:67 , ALA A:71 , GLN A:203 , HOH A:485binding site for residue SCN A 305
6AC6SOFTWAREARG A:131 , HOH A:428 , HOH A:530binding site for residue SCN A 306
7AC7SOFTWARELYS A:40 , HOH A:404 , HOH A:539binding site for residue K A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZAF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Cys A:101 -Pro A:102
2Ala A:141 -Pro A:142

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZAF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZAF)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZAF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhh......hhhhhhhhhhhhhh.....eee.......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zaf A   1 MSGPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQHLVS 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZAF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZAF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZAF)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  4zaf
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        UBIX_PSEAE | Q9HX08: 3zqu 4zag 4zal 4zan 4zav 4zaw 4zax 4zay 4zaz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZAF)