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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CORTICOTROPIN-RELEASING FACTOR RECEPTOR 1 (CRF1R) IN COMPLEX WITH THE ANTAGONIST CP-376395 IN A HEXAGONAL SETTING WITH TRANSLATIONAL NON-CRYSTALLOGRAPHIC SYMMETRY
 
Authors :  A. S. Dore, A. Bortolato, K. Hollenstein, R. K. Y. Cheng, R. J. Read, F. H.
Date :  10 Apr 15  (Deposition) - 29 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.18
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  7Tm, Gpcr, Family B, Signaling Protein, G-Protein, Membrane, Membrane Protein, Receptor, Tncs, Hexagonal (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Dore, A. Bortolato, K. Hollenstein, R. K. Y. Cheng, R. J. Read, F. H. Marshall
Decoding Corticotropin-Releasing Factor Receptor Type 1 Crystal Structures
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CORTICOTROPIN-RELEASING FACTOR RECEPTOR 1,LYSOZYME, CORTICOTROPIN-RELEASING FACTOR RECEPTOR 1
    Chains: A, B, C
    EC Number: 3.2.1.17
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LUPPER
    Expression System Taxid: 7111
    Expression System Vector Type: VIRUS
    Gene: CRHR1, CRFR, CRFR1, CRHR, E, RB51ORF131
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS, ENTEROBACTERIA PHAGE RB51
    Organism Taxid: 9606, 10693
    Other Details: CORTICOTROPIN-RELEASING FACTOR RECEPTOR 1, T4-LYSOZYME CHIMERIC CONSTRUCT
    Synonym: CRFR-1,CORTICOTROPIN-RELEASING HORMONE RECEPTOR 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
11Q53Ligand/Ion3,6-DIMETHYL-N-(PENTAN-3-YL)-2-(2,4,6-TRIMETHYLPHENOXY)PYRIDIN-4-AMINE
2OLA10Ligand/IonOLEIC ACID
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
11Q51Ligand/Ion3,6-DIMETHYL-N-(PENTAN-3-YL)-2-(2,4,6-TRIMETHYLPHENOXY)PYRIDIN-4-AMINE
2OLA3Ligand/IonOLEIC ACID
3SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
11Q51Ligand/Ion3,6-DIMETHYL-N-(PENTAN-3-YL)-2-(2,4,6-TRIMETHYLPHENOXY)PYRIDIN-4-AMINE
2OLA3Ligand/IonOLEIC ACID
3SO4-1Ligand/IonSULFATE ION
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
11Q51Ligand/Ion3,6-DIMETHYL-N-(PENTAN-3-YL)-2-(2,4,6-TRIMETHYLPHENOXY)PYRIDIN-4-AMINE
2OLA4Ligand/IonOLEIC ACID
3SO41Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:227 , TRP A:229 , CYS A:233 , LYS A:314 , PHE A:358 , PHE A:365binding site for residue OLA A 1201
02AC2SOFTWARECYS A:128 , VAL A:132 , ALA A:133 , VAL A:136 , LEU A:140 , ASN A:157 , ILE A:232 , CYS A:364binding site for residue OLA A 1202
03AC3SOFTWAREASN A:157 , ALA A:160 , ILE A:163binding site for residue OLA A 1203
04AC4SOFTWAREPHE A:203 , GLY A:210 , LEU A:280 , ASN A:283 , LEU A:287 , THR A:316 , LEU A:320 , LEU A:323binding site for residue 1Q5 A 1204
05AC5SOFTWARETHR A:1142 , PRO A:1143 , ASN A:1144binding site for residue SO4 A 1205
06AC6SOFTWARESER A:1038 , SER A:1040 , SER C:1036binding site for residue SO4 A 1206
07AC7SOFTWAREILE B:232 , TRP B:236 , OLA B:1202 , CYS C:364binding site for residue OLA B 1201
08AC8SOFTWARELEU B:135 , PHE B:138 , ILE B:153 , OLA B:1201 , LEU C:140binding site for residue OLA B 1202
09AC9SOFTWAREPHE B:365 , TRP C:229binding site for residue OLA B 1203
10AD1SOFTWAREPHE B:203 , MET B:206 , GLY B:210 , LEU B:280 , ASN B:283 , THR B:316 , LEU B:320 , LEU B:323binding site for residue 1Q5 B 1204
11AD2SOFTWAREVAL B:132 , ALA B:133 , VAL B:136 , LEU B:140 , CYS B:364 , LEU C:164 , ALA C:228 , ILE C:232 , TRP C:236 , OLA C:1202binding site for residue OLA C 1201
12AD3SOFTWAREVAL B:136 , LEU C:135 , PHE C:138 , ILE C:153 , ASN C:157 , OLA C:1201binding site for residue OLA C 1202
13AD4SOFTWAREHIS C:199 , GLN C:273 , LEU C:280 , TYR C:327binding site for residue OLA C 1203
14AD5SOFTWARETRP B:229 , CYS B:233 , VAL C:318 , PHE C:358 , VAL C:361binding site for residue OLA C 1204
15AD6SOFTWAREPHE C:203 , MET C:206 , GLY C:210 , ASN C:283 , THR C:316 , LEU C:323binding site for residue 1Q5 C 1205
16AD7SOFTWARESER A:1036 , SER B:1038 , LEU B:1039 , SER B:1040 , SER C:1038 , SER C:1040binding site for residue SO4 C 1206

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:188 -A:258
2B:188 -B:258
3C:188 -C:258

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Pro A:264 -Gly A:265
2Pro A:334 -Gly A:335
3Pro B:264 -Gly B:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z9G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z9G)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z9G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..eeeeee.....eeee..ee.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z9g A  111 KSKVHYHVAAIINYLGHCISLVALLVAFVLFLRARSIRCLRNIIHANLIAAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLSVAKSELDKAIGRNSNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRSALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIATFRTGTWDAYLTDRLRAWMFICIGWGVPFPIIVAWAIGKLYYDNEKCWAGKRPGVYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFVNPGEDEVSRVVFIYFNAFLESFQGFFVSVFACFLNSEVRS  372
                                   120       130       140       150       160       170       180       190       200       210       220|     1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161|      231       241       251       261       271       281       291       301       311       321       331       341       351       361       371 
                                                                                                                                       220|                                                                                                                                                           1161|                                                                                                                                                      
                                                                                                                                       1002                                                                                                                                                             222                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeeeee.....eeee..eeee...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z9g B  113 KVHYHVAAIINYLGHCISLVALLVAFVLFLRARSIRCLRNIIHANLIAAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLSVAKSELDKAIGRNSNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRSALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIATFRTGTWDAYLTDRLRAWMFICIGWGVPFPIIVAWAIGKLYYDNEKCWAGKRPGVYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFVDEVSRVVFIYFNAFLESFQGFFVSVFACFLNSEVRS  372
                                   122       132       142       152       162       172       182       192       202       212      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      1153       223       233       243       253       263       273       283       293       303       313       323       337       347       357       367     
                                                                                                                                     220|                                                                                                                                                           1161|                                                                                                           332|                                   
                                                                                                                                     1002                                                                                                                                                             222                                                                                                            337                                   


Chain C from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.eeeeee.....eeee..ee.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4z9g C  112 SKVHYHVAAIINYLGHCISLVALLVAFVLFLRARSIRCLRNIIHANLIAAFILRNATWFVVQLPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLSVAKSELDKAIGRNSNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRSALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVIATFRTGTWDAYLTDRLRAWMFICIGWGVPFPIIVAWAIGKLYYDNEKCWAYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFEVSRVVFIYFNAFLESFQGFFVSVFACFLNSEV  370
                                   121       131       141       151       161       171  ||   184       194       204       214     |1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155     ||225       235       245       255    || 271       281       291       301       311       321       331|      347       357       367   
                                                                                        174|                                       220|                                                                                                                                                           1161|                                   260|                                                             331|                                
                                                                                         178                                       1002                                                                                                                                                             222                                    267                                                              338
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z9G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z9G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z9G)

(-) Gene Ontology  (33, 33)

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  4z9g
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CRFR1_HUMAN | P34998: 2l27 3ehs 3eht 3ehu 4k5y

(-) Related Entries Specified in the PDB File

4k5y 4K5Y CONTAINS THE SAME PROTEIN MINUS TWO RESIDUES IN THE FUSION TO T4L.