4YY1 - JenaLib

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Title :   THE STRUCTURE OF HEMAGGLUTININ FROM A H6N1 INFLUENZA VIRUS (A/CHICKEN/TAIWAN/A2837/2013) IN COMPLEX WITH HUMAN RECEPTOR ANALOG 6'SLNLN

Authors :   F. Wang, J. Qi, Y. Bi, W. Zhang, M. Wang, M. Wang, J. Liu, J. Yan, Y. Shi, G. F

Date :   23 Mar 15 (Deposition) - 23 Mar 16 (Release) - 23 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (3x)
Biol. Unit 2: C,D  (3x)

Keywords :   Hemagglutinin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Wang, J. Qi, Y. Bi, W. Zhang, M. Wang, M. Wang, J. Liu, J. Yan, Y. Shi, G. F. Gao
Structure Of Hemagglutinin From A H6N1 Influenza Virus (A/Chicken/Taiwan/A2837/2013)
To Be Published
PubMed: search

Molecule 1 - HA1
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	INSECT CELL EXPRESSION VECTOR PTIE1
	Expression System Taxid	:	266783
	Organism Scientific	:	UNIDENTIFIED INFLUENZA VIRUS
	Organism Taxid	:	119212

Molecule 2 - HA2
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	INSECT CELL EXPRESSION VECTOR PTIE1
	Expression System Taxid	:	266783
	Organism Scientific	:	UNIDENTIFIED INFLUENZA VIRUS
	Organism Taxid	:	119212

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (3x)	:	A	B
Biological Unit 2 (3x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
2	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SIA	2	Ligand/Ion	O-SIALIC ACID

Biological Unit 1 (3, 18)

No.	Name	Count	Type	Full Name
1	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
2	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SIA	3	Ligand/Ion	O-SIALIC ACID

Biological Unit 2 (3, 18)

No.	Name	Count	Type	Full Name
1	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
2	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	SIA	3	Ligand/Ion	O-SIALIC ACID

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:23	binding site for Mono-Saccharide NAG A 601 bound to ASN A 23
2	AC2	SOFTWARE	ASN A:167 , THR A:240	binding site for Poly-Saccharide residues NAG A 602 through NAG A 603 bound to ASN A 167
3	AC3	SOFTWARE	GLU B:476 , GLU B:479 , ASN B:483 , THR B:485	binding site for Mono-Saccharide NAG B 501 bound to ASN B 483
4	AC4	SOFTWARE	ASN C:23	binding site for Mono-Saccharide NAG C 601 bound to ASN C 23
5	AC5	SOFTWARE	ASN C:167 , THR C:240	binding site for Poly-Saccharide residues NAG C 602 through NAG C 603 bound to ASN C 167
6	AC6	SOFTWARE	GLU D:476 , GLU D:479 , ASN D:483 , THR D:485	binding site for Mono-Saccharide NAG D 501 bound to ASN D 483
7	AC7	SOFTWARE	TYR A:91 , ARG A:129 , VAL A:131 , THR A:132 , ASN A:133 , HIS A:181 , GLY A:223 , GLN A:224 , SER A:226	binding site for Poly-Saccharide residues SIA A 604 through GAL A 605
8	AC8	SOFTWARE	TYR C:91 , ARG C:129 , VAL C:131 , THR C:132 , ASN C:133 , VAL C:188 , GLY C:223 , GLN C:224 , SER C:226	binding site for Poly-Saccharide residues SIA C 604 through GAL C 605

Asymmetric Unit

No.	Residues
1	A:4	-	B:466
2	A:42	-	A:277
3	A:55	-	A:67
4	A:90	-	A:135
5	A:281	-	A:305
6	B:473	-	B:477
7	C:4	-	D:466
8	C:42	-	C:277
9	C:55	-	C:67
10	C:90	-	C:135
11	C:281	-	C:305
12	D:473	-	D:477

(no "Cis Peptide Bond" information available for 4YY1)

(no "SAP(SNP)/Variant" information available for 4YY1)

(no "PROSITE Motif" information available for 4YY1)

(no "Exon" information available for 4YY1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhh.hhhhh.....ee...eee...........eee.hhhhhhhhhhheeeeeeee..hhhhh..ee.....................eee.ee........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeeee..eeeee...............eeeeeeeee....eeeeee...eeee.eeeeeee......eee....eeeeee.eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yy1 A   1 DKICIGYHANNSTTQVDTLLEKNVTVTHSVELLENQKEKRFCKIMNKAPLDLKDCTIEGWILGNPKCDLLLGDQSWSYIVERPNAQNGICYPGVLNELEELKAFIGSGERVERFEMFPKSTWAGVDTSRGVTNACPSYTLDSSFYRNLVWLVKTDSATYPVIKGTYNNTGTQPILYFWGVHHPPDTTVQDNLYGSGDKYVRMGTESMNFAKSPEIAARPAVNGQRSRIDYYWSVLRPGETLNVESNGNLIAPWYAYKFVSTNKKGAVFKSDLPIENCDATCQTIAGVLKTNKTFQNVSPLWIGECPKYVKSESLRLATGLRNVPQ 325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee.....eeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eeee....hhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yy1 B 330 GIFGAIAGFIEGGWTGMIDGWYGYHHENSQGSGYAADRESTQKAIDGITNKVNSIINKMNTQFEAVDHEFSNLERRIGNLNKRMEDGFLDVWTYNAELLVLLENERTLDLHDANVKNLYEKVKSQLRDNANDLGNGCFEFWHKCDNECMESVKNGTYDYPKYQK 493
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489

Chain C from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhh.hhhhhhhh..ee...eee...........eee.hhhhhhhhhhheeeeeeee..hhhhh..ee.....................eee.ee........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeeee..eeeee...............eeeeeeeee....eeeeee...eeee.eeeeeee......eee....eeeeee.eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yy1 C   1 DKICIGYHANNSTTQVDTLLEKNVTVTHSVELLENQKEKRFCKIMNKAPLDLKDCTIEGWILGNPKCDLLLGDQSWSYIVERPNAQNGICYPGVLNELEELKAFIGSGERVERFEMFPKSTWAGVDTSRGVTNACPSYTLDSSFYRNLVWLVKTDSATYPVIKGTYNNTGTQPILYFWGVHHPPDTTVQDNLYGSGDKYVRMGTESMNFAKSPEIAARPAVNGQRSRIDYYWSVLRPGETLNVESNGNLIAPWYAYKFVSTNKKGAVFKSDLPIENCDATCQTIAGVLKTNKTFQNVSPLWIGECPKYVKSESLRLATGLRNVPQ 325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain D from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee.....eeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee....eeee....hhhhhhhhhh...hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yy1 D 330 GIFGAIAGFIEGGWTGMIDGWYGYHHENSQGSGYAADRESTQKAIDGITNKVNSIINKMNTQFEAVDHEFSNLERRIGNLNKRMEDGFLDVWTYNAELLVLLENERTLDLHDANVKNLYEKVKSQLRDNANDLGNGCFEFWHKCDNECMESVKNGTYDYPKYQK 493
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4YY1)

(no "CATH Domain" information available for 4YY1)

(no "Pfam Domain" information available for 4YY1)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4YY1)

Asymmetric Unit
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		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4yy1)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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4yy0	4YY0 CONTAINS THE SAME PROTEIN.
4yy7	4YY7 CONTAINS THE SAME PROTEIN COMPLEXED WITH AVIAN RECEPTOR ANOLOG 3'SLNLN.
4yy9
4yya
4yyb

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (8, 8)

SS Bonds (12, 12)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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