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(-) Description

Title :  THE STRUCTURE OF HEMAGGLUTININ FROM A H6N1 INFLUENZA VIRUS (A/TAIWAN/2/2013) IN COMPLEX WITH AVIAN RECEPTOR ANALOG 3'SLNLN
 
Authors :  F. Wang, J. Qi, Y. Bi, W. Zhang, M. Wang, M. Wang, J. Liu, J. Yan, Y. Shi, G. F
Date :  23 Mar 15  (Deposition) - 13 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Hemagglutinin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Wang, J. Qi, Y. Bi, W. Zhang, M. Wang, M. Wang, J. Liu, J. Yan, Y. Shi, G. F. Gao
Structure Of Hemagglutinin From A H6N1 Influenza Virus (A/Chicken/Taiwan/A2837/2013)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HA1
    Chains: A
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Taxid: 266783
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 119212
 
Molecule 2 - HA2
    Chains: B
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Taxid: 266783
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 119212

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2GAL2Ligand/IonBETA-D-GALACTOSE
3NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SIA1Ligand/IonO-SIALIC ACID
Biological Unit 1 (4, 27)
No.NameCountTypeFull Name
1BMA3Ligand/IonBETA-D-MANNOSE
2GAL6Ligand/IonBETA-D-GALACTOSE
3NAG15Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SIA3Ligand/IonO-SIALIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:91 , ARG A:129 , VAL A:131 , THR A:132 , ASN A:133 , HIS A:181 , GLY A:223 , GLN A:224 , SER A:226binding site for Poly-Saccharide residues SIA A 603 through GAL A 606

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:4 -B:466
2A:42 -A:277
3A:55 -A:67
4A:90 -A:135
5A:281 -A:305
6B:473 -B:477

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YYA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YYA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YYA)

(-) Exons   (0, 0)

(no "Exon" information available for 4YYA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhh..........ee...eee...............hhhhhhhhhhheeeeeeee..hhhhh.........................eee...........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeee......eee....eeeeee.eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yya A   1 DKICIGYHANNSTTQVDTLLEKNVTVTHSVELLENQKEKRFCKIMNKAPLDLKDCTIEGWILGNPKCDLLLGDQSWSYIVERPNAQNGICYPGVLNELEELKAFIGSGERVERFEMFPKSTWAGVDTSRGVTNACPSYTLDSSFYRNLVWLVKTDSATYPVIKGTYNNTGTQPILYFWGVHHPLDTTVQDNLYGSGDKYVRMGTESMNFAKSPEIAARPAVNGQRSRIDYYWSVLRPGETLNVESNGNLIAPWYAYKFVSTNKKGAVFKSDLPIENCDATCQTITGVLRTNKTFQNVSPLWIGECPKYVKSESLRLATGLRNVPQ 325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     


Chain B from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yya B 330 GIFGAIAGFIEGGWTGMIDGWYGYHHENSQGSGYAADRESTQKAIDGITNKVNSIINKMNTQFEAVDHEFSNLERRIGNLNKRMEDGFLDVWTYNAELLVLLENERTLDLHDANVKNLYEKVKSQLRDNANDLGNGCFEFWHKCDNECMESVKNGTYDYPKYQKESKLNRQ 500
                                   339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YYA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YYA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YYA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4YYA)

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  4yya
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0J9X267_9 | A0A0J9X267: 4xkd 4xke 4xkf 4xkg 4yy0 4yy1 4yy7 4yy9 4yyb
        A0A0J9X268_9 | A0A0J9X268: 4xkd 4xke 4xkf 4xkg 4yy0 4yy1 4yy7 4yy9 4yyb

(-) Related Entries Specified in the PDB File

4yy0 4yy1 4yy7 4yy9 4yyb