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(-) Description

Title :  P21 ISOFORM OF MEC-17 FROM DANIO RERIO
 
Authors :  T. Xue
Date :  15 Mar 15  (Deposition) - 01 Jul 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.86
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Acetyltransferase, Acetylation, Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Xue
Structure Of Drmec-17 Residue 2-185 At 2. 85 Angstroms Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALPHA-TUBULIN N-ACETYLTRANSFERASE 1
    Chains: A, B
    EC Number: 2.3.1.108
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-185
    Gene: ATAT1, MEC17
    Organism Common: ZEBRAFISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Synonym: TAT,ACETYLTRANSFERASE MEC-17 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ACO2Ligand/IonACETYL COENZYME *A
2EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:53 , VAL A:115 , LEU A:116 , ASP A:117 , PHE A:118 , TYR A:119 , VAL A:120 , GLN A:125 , ARG A:126 , HIS A:127 , GLY A:130 , SER A:131 , ASP A:151 , SER A:154 , LYS A:156 , PHE A:160 , LYS A:163binding site for residue ACO A 201
2AC2SOFTWAREHIS A:127 , TYR A:129binding site for residue EPE A 202
3AC3SOFTWAREGLN B:53 , VAL B:115 , LEU B:116 , PHE B:118 , TYR B:119 , VAL B:120 , GLN B:125 , ARG B:126 , HIS B:127 , GLY B:128 , GLY B:130 , SER B:131 , ASP B:151 , SER B:154 , LYS B:156 , SER B:159 , PHE B:160 , LYS B:163binding site for residue ACO B 201
4AC4SOFTWARELEU B:124 , HIS B:127 , TYR B:129binding site for residue EPE B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YRH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YRH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YRH)

(-) Exons   (0, 0)

(no "Exon" information available for 4YRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh...eeee........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhh..eeeeeee..hhhhh.eeeeeeeeee..eeee.....eeee..eeeeeeee.......hhhhhhhhhhhhhhh.hhhhheee..hhhhhhhhhhhhh...ee.....eeee.hhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yrh A   2 DFPYDLNALFPERISVLDSNLSRPDPLPQVTTVIDELGKASSKAQQLPAPITSAAKLQANRHHLYLLKDGEQNGGRGVIVGFLKVGYKKLFLLDQRGAHLETEPLCVLDFYVTETLQRHGYGSELFDFmLKHKQVEPAQmAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVFAGFFQ 185
                                    11        21 ||     38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       
                                                23|                                                                                                       137-MSE    148-MSE                                 
                                                 31                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...eeee........hhhhhhhhhhhhhhhhhhhh.......hhhhhhhh..eeeeeee.....eeeeeeeeee..eeee.....eeee..eeeeeeee.......hhhhhhhhhhhhhhh.hhhhheee..hhhhhhhhhhhhh...ee.....eeee.hhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yrh B   4 PYDLNALFPERISVLDSNLSRPDPLPQVTTVIDELGKASSKAQQLPAPITSAAKLQANRHHLYLLKDGEGRGVIVGFLKVGYKKLFLLDQRGAHLETEPLCVLDFYVTETLQRHGYGSELFDFmLKHKQVEPAQmAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVFAGFFQ 185
                                    13        23|       40        50        60        70        83        93       103       113       123       133   |   143    |  153       163       173       183  
                                              23|                                              79|                                                   137-MSE    148-MSE                                 
                                               31                                               83
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YRH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YRH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YRH)

(-) Gene Ontology  (16, 16)

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  4yrh
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  2.3.1.108
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATAT_DANRE | Q6PH17: 4h6u 4h6z 4hkf

(-) Related Entries Specified in the PDB File

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