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(-) Description

Title :  TUBULIN ACETYLTRANSFERASE
 
Authors :  L. Kizub, A. Szyk, G. Piszczek, A. Roll-Mecak
Date :  19 Sep 12  (Deposition) - 07 Nov 12  (Release) - 26 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Transferase, Tubulin Acetyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Kormendi, A. Szyk, G. Piszczek, A. Roll-Mecak
Crystal Structures Of Tubulin Acetyltransferase Reveal A Conserved Catalytic Core And The Plasticity Of The Essentia N Terminus.
J. Biol. Chem. V. 287 41569 2012
PubMed-ID: 23105108  |  Reference-DOI: 10.1074/JBC.C112.421222

(-) Compounds

Molecule 1 - ALPHA-TUBULIN N-ACETYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.108
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH
    Organism Scientific: DANIO RERIO
    Organism Taxid: 7955
    Synonym: ALPHA-TAT, TAT, ACETYLTRANSFERASE MEC-17 HOMOLOG

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1ACO2Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE3Mod. Amino AcidSELENOMETHIONINE
3PO4-1Ligand/IonPHOSPHATE ION
Biological Unit 3 (3, 10)
No.NameCountTypeFull Name
1ACO2Ligand/IonACETYL COENZYME *A
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:115 , ASP A:117 , PHE A:118 , TYR A:119 , VAL A:120 , GLN A:125 , ARG A:126 , HIS A:127 , GLY A:128 , GLY A:130 , SER A:131 , ASP A:151 , ARG A:152 , SER A:154 , LYS A:156 , PHE A:157 , SER A:159 , PHE A:160 , LYS A:163 , HOH A:301BINDING SITE FOR RESIDUE ACO A 201
2AC2SOFTWAREGLU A:13 , HIS A:70 , LYS A:92 , HIS B:70 , LYS B:92BINDING SITE FOR RESIDUE PO4 A 202
3AC3SOFTWAREHIS A:71 , LYS A:141 , ARG B:14BINDING SITE FOR RESIDUE PO4 A 203
4AC4SOFTWAREGLU B:109 , ASP B:117 , PHE B:118 , TYR B:119 , VAL B:120 , GLN B:125 , ARG B:126 , HIS B:127 , GLY B:128 , TYR B:129 , GLY B:130 , SER B:131 , ASP B:151 , SER B:154 , LYS B:156 , PHE B:157 , SER B:159 , PHE B:160 , LYS B:163BINDING SITE FOR RESIDUE ACO B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H6Z)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala B:48 -Ser B:49

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H6Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H6Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4H6Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhh....eeeee..eeeeee....eeeeeeee.....eeeeeeeeee..eeee.....eeee..eeeeeeee.hhhh..hhhhhhhhhhhhhhh.hhhhheee..hhhhhhhhhhhhh...ee.....eeee.hhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h6z A  -3 SFTmDFPYDLNALFPERISVLDSTTVIDELGKARHHLYLLKDGEGRGVIVGFLKVGYKKLFLLDQRGAHLETEPLCVLDFYVTETLQRHGYGSELFDFmLKHKQVEPAQmAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVFAGFFQ 185
                              ||     7        17  ||    45  ||    75   ||   88        98       108       118       128       138       148       158       168       178       
                             -1|                 20|       48|        79|                                                   137-MSE    148-MSE                                 
                               1-MSE              39        69         83                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhh...eeeee...eeeeee.....eeeeeee...eeeeeeeee..eeee.....eeee..eeeeeeee.......hhhhhhhhhhhhhh..hhhhheee..hhhhhhhhhhhh...........ee.hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h6z B  -3 SFTmDFPYDLNALFPERISVLDSNTTVIDELGKASRHHLYLLKDGVIVGFLKVGYKKLFLLDQRGAHLETEPLCVLDFYVTETLQRHGYGSELFDFmLKHKQVEPAQmAYDRPSPKFLSFLEKRYDLRNSVPQVNNFVVFAGFFQ 185
                              ||     7        17   ||   44    ||  73   ||   90       100       110       120       130      |140       150       160       170       180     
                             -1|                  21|        49|      77|                                                 137-MSE    148-MSE                                 
                               1-MSE               39         69       85
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H6Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H6Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H6Z)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ATAT_DANRE | Q6PH17: 4h6u 4hkf 4yrh

(-) Related Entries Specified in the PDB File

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