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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHS5-CHS6 EXOMER CARGO ADAPTOR COMPLEX
 
Authors :  J. E. Paczkowski, B. C. Richardson, A. M. Strassner, J. C. Fromme
Date :  26 Feb 15  (Deposition) - 11 Mar 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  A,B  (6x)
Keywords :  Fn3, Brct, Tetratricopeptide Repeat, Cargo Adaptor, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. E. Paczkowski, B. C. Richardson, A. M. Strassner, J. C. Fromme
The Exomer Cargo Adaptor Structure Reveals A Novel Gtpase-Binding Domain.
Embo J. V. 31 4191 2012
PubMed-ID: 23000721  |  Reference-DOI: 10.1038/EMBOJ.2012.268

(-) Compounds

Molecule 1 - CHITIN BIOSYNTHESIS PROTEIN CHS5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CHS5
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: SEY6210
 
Molecule 2 - CHITIN BIOSYNTHESIS PROTEIN CHS6
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CHS6, CSD3, YJL099W, J0838
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: SEY6210
    Synonym: PROTEIN CSD3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB
Biological Unit 2 (6x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 42)

Asymmetric Unit (3, 42)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2GOL1Ligand/IonGLYCEROL
3UNK40Mod. Amino Acid
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2GOL2Ligand/IonGLYCEROL
3UNK-1Mod. Amino Acid
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1EPE6Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2GOL6Ligand/IonGLYCEROL
3UNK-1Mod. Amino Acid

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN B:191 , THR B:192 , LYS B:197 , GLN B:650 , ASP B:685 , ASN B:690 , HOH B:935 , HOH B:1011 , HOH B:1063binding site for residue EPE B 801
2AC2SOFTWARESER B:82 , THR B:133 , ARG B:148 , PRO B:280 , HOH B:921binding site for residue GOL B 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YG8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YG8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YG8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YG8)

(-) Exons   (0, 0)

(no "Exon" information available for 4YG8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..eee.....eee..............eeee.....hhhhhhhhhhhhhhhhhhhhhhh.......eeeeee....eeeee.........eeeeeee................eeee.......eeeeeeeeee..eeeeeeeeeee...........eee...hhhhh.hhhhhhhhhhhh..............eee.........hhhhhhhhhh...ee.hhhhhhhhhh.....hhhhh...hhhhhhhhh....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yg8 A   4 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSQNLEEEKKQRNHFKSIQAKILEKYGTHKPESPVLKIVNVTQTSCVLAWDPLKLGSAKLKSLILYRKGIRSMVIPNPFKVTTTKISGLSVDTPYEFQLKLITTSGTLWSEKVILRTHKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWVRACEVEKRIVGVRGFYLDADQSILKSYTFPPVNEEELSYS 285
                            ||||||||18||||||||28||||||||38||||||||48|       59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279      
                            |||||||12-UNK|||26-UNK|||35-UNK|||44-UNK|                                                                                                                                                                                                                                           
                            4-UNK|||18-UNK|||27-UNK|||36-UNK|||45-UNK                                                                                                                                                                                                                                           
                             5-UNK|| 19-UNK|| 28-UNK|| 37-UNK|| 46-UNK                                                                                                                                                                                                                                          
                              6-UNK|  20-UNK|  29-UNK|  38-UNK|  47-UNK                                                                                                                                                                                                                                         
                               7-UNK   21-UNK   30-UNK   39-UNK   48-UNK                                                                                                                                                                                                                                        
                                8-UNK   22-UNK   31-UNK   40-UNK   50                                                                                                                                                                                                                                           
                                 9-UNK   23-UNK   32-UNK   41-UNK                                                                                                                                                                                                                                               
                                 10-UNK   24-UNK   33-UNK   42-UNK                                                                                                                                                                                                                                              
                                  11-UNK   25-UNK   34-UNK   43-UNK                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..eee....hhhhhhhhhhhhhhhhh.........eeeeeeee.....eeeeeeeee......hhhhhhhhhhhhhh......eeeeeeeeeeeee....eeeeeee.....eeeeee.......ee..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.......hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhh.......................hhhhhhhhhhhh...hhhhhhhhee..ee.........hhhhhh..........hhhhhh.....hhhhhhh..hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yg8 B  31 GYQFLNRDIFKSCPRIMERQFGECLHNRTHLIKDLISSGNVGLGPIEIVHMSYLNKHEKEEFGEYFYVTGIEVSGPAMPVEFLEVLKSSKRISKNISNNIILTYCCFNFFSNLDIRIRYDADDTFQTTAIDCNKETTDLTMTEKMWEETFASSVIRAIITNTNPELKPPGLVECPFYVGKDTISSCKKIIELLCRFLPRSLNCGWDSTKSMQATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPRRFLTSNYYKKPLNGTREHYDLTAMEFTNLSGTLRNWKEDELKRQIFGRIAMINEKKIGYTKEIWDDIAIKLGPICGPQSVNLINYVSPQEVKNIKNINLIARNTIGKQLGWFSGKIYGLLMEIVNKIGWNGLLNIRTEAFMMCEGWLDDLFLDLYQDLKLSKISLSNKDEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYNYCQIFNLQLLEKLCNELGTHILRNKILLQPSIGDEIMVMIDAMLAWIADLDHT 743
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553||     590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740   
                                                                                                                                                                                                                                                                                                                                                                                                          399|                                                                                                                                          554|                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                           413                                                                                                                                           582
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YG8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YG8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YG8)

(-) Gene Ontology  (16, 25)

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 Related Entries

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        CHS5_YEAST | Q12114: 4in3 4wjw
        CHS6_YEAST | P40955: 4wjw

(-) Related Entries Specified in the PDB File

4gns 4GNS IS AN EARLIER VERSION OF THIS STRUCTURE, CONTAINING AN ERRONEOUS CIS-PEPTIDE.