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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHS5-CHS6 EXOMER CARGO ADAPTOR COMPLEX BOUND TO PORTION OF CHS3
 
Authors :  A. M. Weiskoff, J. C. Fromme
Date :  01 Oct 14  (Deposition) - 15 Oct 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A,B,P
Biol. Unit 1:  A,B,P  (2x)
Keywords :  Adaptor Protein, Cargo Binding, Vesicular Trafficking, Chitin Synthase, Biosynthetic Protein, Transport Protein-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Weiskoff, J. C. Fromme
Distinct N-Terminal Regions Of The Exomer Secretory Vesicle Cargo Chs3 Regulate Its Trafficking Itinerary.
Front Cell Dev Biol V. 2 47 2014
PubMed-ID: 25364754  |  Reference-DOI: 10.3389/FCELL.2014.00047

(-) Compounds

Molecule 1 - CHITIN BIOSYNTHESIS PROTEIN CHS5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-77
    Gene: CHS5, CAL3, YLR330W, L8543.18
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: PROTEIN CAL3
 
Molecule 2 - CHITIN BIOSYNTHESIS PROTEIN CHS6
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CHS6, CSD3, YJL099W, J0838
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: PROTEIN CSD3
 
Molecule 3 - CHITIN SYNTHASE 3
    Chains: P
    EC Number: 2.4.1.16
    Engineered: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: CHITIN-UDP ACETYL-GLUCOSAMINYL TRANSFERASE 3,CLASS-IV CHITIN SYNTHASE 3
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABP
Biological Unit 1 (2x): ABP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WJW)

(-) Sites  (0, 0)

(no "Site" information available for 4WJW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WJW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WJW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WJW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WJW)

(-) Exons   (0, 0)

(no "Exon" information available for 4WJW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:68
                                                                                                    
               SCOP domains -------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee....ee.................................hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 4wjw A   4 VDVLLTVGKALLTTQDHHVIEFPTVLLPENVKAGSIIKMQSQNLEEEKKQRNHFKSIQAKILEKYGTH  77
                                    18        28        38        48|       59        69        
                                   12|                            48|                           
                                    18                             50                           


Chain B from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eee....hhhhhhhhhhhhhhhh.........eeeeeeee......eeeeeeeee......hhhhhhhhhhhhhh...........eeeeeeee....eeeeeee.....eeeeeee......ee..hhhhhhhhhhhhhhhhhhhhhhhhhh....ee.......hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhh........................hhhhhhhhhhhh...hhhhhhhh....ee.........hhhhhh..........hhhhhh.....hhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wjw B  31 GYQFLNRDIFKSCPRIMERQFGECLHNRTHLIKDLISSGNVGLGPIEIVHMSYLNKHEKEEFGEYFYVTGIEVSGPAMPVEFLEVLKSSKRISKNISNNIILTYCCFNFFSNLDIRIRYDADDTFQTTAIDCNKETTDLTMTEKMWEETFASSVIRAIITNTNPELKPPGLVECPFYVGKDTISSCKKIIELLCRFLPRSLNCGWDSTKSMQATIVNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMPRRFLTSNYYKKPLNGTREHYDLTAMEFTNLSGTLRNWKEDELKRQIFGRIAMINEKKIGYTKEIWDDIAIKLGPICGPQSVNLINYVSPQEVKNIKNINLIARNTIGKQLGWFSGKIYGLLMEIVNKIGWNGLLNIRTEAFMMCEGWLDDLFLDLYQDLKLSKISLSNKDEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRYYNYCQIFNLQLLEKLCNELGTHILRNKILLQPSIGDEIMVMIDAMLAWIADLDHT 743
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553||     590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740   
                                                                                                                                                                                                                                                                                                                                                                                                          399|                                                                                                                                          554|                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                           413                                                                                                                                           582                                                                                                                                                                 


Chain P from PDB  Type:PROTEIN  Length:14
                                              
               SCOP domains -------------- SCOP domains
               CATH domains -------------- CATH domains
               Pfam domains -------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------- SAPs(SNPs)
                    PROSITE -------------- PROSITE
                 Transcript -------------- Transcript
                 4wjw P   2 YYLNLNQDEESLLR  15
                                    11
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WJW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WJW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WJW)

(-) Gene Ontology  (29, 42)

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  CHS5_YEAST | Q12114
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  CHS6_YEAST | P40955
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CHS5_YEAST | Q12114: 4in3 4yg8
        CHS6_YEAST | P40955: 4yg8

(-) Related Entries Specified in the PDB File

4gns 4GNS CONTAINS THE CHS5/CHS6 EXOMER COMPLEX WITH A LONGER FRAGMENT OF CHS5 (1- 299) LACKING THE CHS3 PEPTIDE.
4in3 4IN3 CONTAINS THE CHS5(1-77)/BCH1 EXOMER COMPLEX
4q66 4Q66 CONTAINS THE CHS5(1-299)/BCH1 EXOMER COMPLEX BOUND TO ITS REGULATOR ARF1