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(-) Description

Title :  CRYSTAL STRUCTURE OF ADP-RIBOSYLTRANSFERASE VIS IN COMPLEX WITH M6 INHIBITOR
 
Authors :  R. Ravulapalli, R. Merrill
Date :  19 Feb 15  (Deposition) - 18 Nov 15  (Release) - 18 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Inhibitor, Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Ravulapalli, M. R. Lugo, R. Pfoh, D. Visschedyk, A. Poole, R. J. Fieldhouse, E. F. Pai, A. R. Merrill
Characterization Of Vis Toxin, A Novel Adp-Ribosyltransferase From Vibrio Splendidus.
Biochemistry V. 54 5920 2015
PubMed-ID: 26352925  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00921

(-) Compounds

Molecule 1 - PUTATIVE NAD(+)--ARGININE ADP-RIBOSYLTRANSFERASE VIS
    Chains: A
    EC Number: 2.4.2.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 20-240
    Gene: V12B01_18061
    Organism Scientific: VIBRIO SPLENDIDUS
    Organism Taxid: 29497
    Synonym: PUTATIVE MONO(ADP-RIBOSYL)TRANSFERASE,MART,TOXIN VIS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
15OF1Ligand/Ion2-(4-OXIDANYLIDENE-3~{H}-PHTHALAZIN-1-YL)ETHANOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:72 , ARG A:117 , GLY A:118 , SER A:142 , ALA A:150 , PHE A:153 , GLU A:191 , HOH A:405 , HOH A:449 , HOH A:450 , HOH A:543binding site for residue 5OF A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YC0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YC0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YC0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YC0)

(-) Exons   (0, 0)

(no "Exon" information available for 4YC0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......eeeeeeeeeehhhhh......eeee...eeee.hhhhhhhhhh........eeeeeeeeee....ee...........eeee...eeeeeeeeeee..eeeeeeeeehhhhh....eee.....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yc0 A  19 GPFDAIKQPNRSEEEVTQLAEDFKDWSKASNGWRYSFITANEKEAVEDFSISGYQTANDYLRATDTSTWGVAGADARQYIRTVKSALNKLPKYKGTAYRGTWVKLSLLNKLEEGDVLVEPAFTSTSTLPEVAKRFSVVHPNSPQRLKRVLFEVKINQGGHTIAGLSEYSKEAEVLFAPNAHFRITQIERTSNHTYIGVETVKASAVKNTQKYNLYSGEEVEA 240
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YC0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YC0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YC0)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4yc0
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  VIS_VIBS1 | A3UNN4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VIS_VIBS1 | A3UNN4: 4xzj 4xzk 4y1w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4YC0)