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(-) Description

Title :  CRYSTAL STRUCTURE OF ADP-RIBOSYLTRANSFERASE VIS IN COMPLEX WITH AGMATINE
 
Authors :  R. Pfoh, R. Ravulapalli, A. R. Merrill, E. F. Pai
Date :  04 Feb 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Ravulapalli, D. Visschedyk, R. Pfoh, M. Logo, R. J. Fieldhouse, E. F. Pai, A. R. Merrill
Vis Toxin, An Adp-Ribosyltransferase From Vibrio Splendidus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE NAD(+)--ARGININE ADP-RIBOSYLTRANSFERASE VIS
    Chains: A
    EC Number: 2.4.2.31
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 28-MHL
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: V12B01_18061
    Organism Scientific: VIBRIO SPLENDIDUS
    Organism Taxid: 29497
    Synonym: PUTATIVE MONO(ADP-RIBOSYL)TRANSFERASE,MART,TOXIN VIS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1AG21Ligand/IonAGMATINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:68 , ARG A:117 , GLY A:118 , SER A:142 , PHE A:153 , GLU A:189 , GLU A:191 , HOH A:802binding site for residue AG2 A 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XZK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XZK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XZK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XZK)

(-) Exons   (0, 0)

(no "Exon" information available for 4XZK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeehhhhh......eeee...eeee.hhhhhhhh..........eeeeeeeeee....ee.hhhh....eeee...eeeeeeeeee....eeeeeeeehhhhh....eee.....ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xzk A  21 FDAIKQPNRSEEEVTQLAEDFKDWSKASNYSFITANEKEAVEDFSISGYQTANDYLRATDTSTWGVAGADARQYIRTVKSALNKLPKYKGTAYRGTWVKLSLLNKLEEGDVLVEPAFTSTSTLPEVAKRFSVVHPNSPQRLKRVLFEVKINQGGHTIAGLSSKEAEVLFAPNAHFRITQIERTSNHTYIGVETVKASAVKNTQKYNLYSGEEVEA 240
                                    30        40        53        63        73        83        93       103       113       123       133       143       153       163       173       183||     195       205       215       225       235     
                                                       49|                                                                                                                                184|                                                     
                                                        53                                                                                                                                 187
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XZK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XZK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XZK)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  4xzk
    Family and Domain Information: ProDom | SYSTERS
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  VIS_VIBS1 | A3UNN4
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  2.4.2.31
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VIS_VIBS1 | A3UNN4: 4xzj 4y1w 4yc0

(-) Related Entries Specified in the PDB File

4xzj