Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  THIAZOLE SYNTHASE THI4 FROM METHANOCALDOCOCCUS JANNASCHII
 
Authors :  X. Zhang, S. E. Ealick
Date :  10 Feb 15  (Deposition) - 09 Mar 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.71
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Thiazole Synthase, Isomerase, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  X. Zhang, B. E. Eser, P. K. Chanani, T. P. Begley, S. E. Ealick
Structural Basis For Iron-Mediated Sulfur Transfer In Archael And Yeast Thiazole Synthases.
Biochemistry V. 55 1826 2016
PubMed-ID: 26919468  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00030

(-) Compounds

Molecule 1 - PUTATIVE RIBOSE 1,5-BISPHOSPHATE ISOMERASE
    ChainsA, B, C, D, E, F, G, H
    EC Number5.3.1.29
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    GeneMJ0601
    Organism ScientificMETHANOCALDOCOCCUS JANNASCHII
    Organism Taxid243232
    StrainATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440
    SynonymRIBULOSE 1,5-BISPHOSPHATE SYNTHASE,RUBP SYNTHASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
148F8Ligand/Ion[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL][(2R,3R)-2,3,5-TRIS(OXIDANYL)-4-OXIDANYLIDENE-PENTYL]HYDROGEN PHOSPHATE
2NHE5Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:42 , GLY A:43 , GLY A:45 , PRO A:46 , SER A:47 , GLU A:66 , ARG A:67 , HIS A:68 , GLY A:73 , GLY A:74 , ILE A:136 , VAL A:138 , ALA A:178 , THR A:179 , GLY A:180 , SER A:184 , GLY A:229 , MET A:230 , GLY A:242 , PHE A:245 , MET A:248 , HIS D:164 , ASP D:166binding site for residue 48F A 301
02AC2SOFTWAREASP A:198 , PRO A:200 , VAL A:221 , SER A:235 , HIS A:236 , GLU C:196binding site for residue NHE A 302
03AC3SOFTWAREVAL B:42 , GLY B:43 , GLY B:45 , PRO B:46 , SER B:47 , GLU B:66 , ARG B:67 , HIS B:68 , GLY B:73 , GLY B:74 , ILE B:136 , VAL B:137 , VAL B:138 , ALA B:178 , THR B:179 , GLY B:180 , SER B:184 , GLY B:229 , MET B:230 , GLY B:242 , MET B:248 , HIS F:164 , ASP F:166binding site for residue 48F B 301
04AC4SOFTWAREHIS B:164 , ASP B:166 , VAL C:42 , GLY C:43 , GLY C:45 , PRO C:46 , SER C:47 , GLU C:66 , ARG C:67 , HIS C:68 , GLY C:73 , GLY C:74 , ILE C:136 , VAL C:138 , ALA C:178 , THR C:179 , GLY C:180 , SER C:184 , GLY C:229 , MET C:230 , GLY C:242 , PHE C:245 , MET C:248binding site for residue 48F C 301
05AC5SOFTWAREALA C:197 , ASP C:198 , SER C:235 , HIS C:236binding site for residue NHE C 302
06AC6SOFTWAREVAL D:42 , GLY D:43 , GLY D:45 , PRO D:46 , SER D:47 , GLU D:66 , ARG D:67 , HIS D:68 , GLY D:73 , GLY D:74 , ILE D:136 , VAL D:138 , ALA D:178 , THR D:179 , GLY D:180 , SER D:184 , GLY D:229 , MET D:230 , GLY D:242 , MET D:248 , HIS E:164 , ASP E:166binding site for residue 48F D 301
07AC7SOFTWAREVAL E:42 , GLY E:43 , GLY E:45 , PRO E:46 , SER E:47 , GLU E:66 , ARG E:67 , HIS E:68 , GLY E:73 , GLY E:74 , ILE E:136 , VAL E:138 , ALA E:178 , THR E:179 , GLY E:180 , SER E:184 , GLY E:229 , MET E:230 , MET E:241 , GLY E:242 , MET E:248 , HIS G:164 , ASP G:166binding site for residue 48F E 301
08AC8SOFTWAREVAL F:42 , GLY F:43 , GLY F:45 , PRO F:46 , SER F:47 , GLU F:66 , ARG F:67 , HIS F:68 , GLY F:73 , GLY F:74 , ILE F:136 , VAL F:138 , ALA F:178 , THR F:179 , GLY F:180 , SER F:184 , GLY F:229 , MET F:230 , GLY F:242 , PHE F:245 , MET F:248 , HOH F:401 , HOH F:402 , HIS H:164 , ASP H:166binding site for residue 48F F 301
09AC9SOFTWAREALA F:197 , ASP F:198 , SER F:235 , GLU G:196binding site for residue NHE F 302
10AD1SOFTWAREHIS A:164 , ASP A:166 , VAL G:42 , GLY G:43 , GLY G:45 , PRO G:46 , SER G:47 , GLU G:66 , ARG G:67 , HIS G:68 , GLY G:73 , GLY G:74 , ILE G:136 , VAL G:138 , ALA G:178 , THR G:179 , GLY G:180 , SER G:184 , GLY G:229 , MET G:230 , GLY G:242 , PHE G:245 , MET G:248 , HOH G:401 , HOH G:402binding site for residue 48F G 301
11AD2SOFTWAREGLU F:196 , ALA G:197 , ASP G:198 , PRO G:200 , SER G:235 , HIS G:236binding site for residue NHE G 302
12AD3SOFTWAREHIS C:164 , ASP C:166 , VAL H:42 , GLY H:43 , GLY H:45 , PRO H:46 , SER H:47 , GLU H:66 , ARG H:67 , HIS H:68 , GLY H:73 , GLY H:74 , ILE H:136 , VAL H:137 , VAL H:138 , ALA H:178 , THR H:179 , GLY H:180 , SER H:184 , GLY H:229 , MET H:230 , GLY H:242 , PHE H:245 , MET H:248binding site for residue 48F H 301
13AD4SOFTWAREGLU D:196 , ALA H:197 , ASP H:198 , PRO H:200 , VAL H:221 , SER H:235 , HIS H:236binding site for residue NHE H 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y4M)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Glu A:89 -Pro A:90
2Glu B:89 -Pro B:90
3Glu C:89 -Pro C:90
4Glu D:89 -Pro D:90
5Glu E:89 -Pro E:90
6Glu F:89 -Pro F:90
7Glu G:89 -Pro G:90
8Glu H:89 -Pro H:90

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y4M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y4M)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y4M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m A   5 MNIKDIKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLK 264
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain B from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeee..................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eee..eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m B  10 IKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLKN 265
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259      

Chain C from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m C  10 IKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLK 264
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259     

Chain D from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee..hhhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m D  10 IKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLK 264
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259     

Chain E from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m E  10 IKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLKN 265
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259      

Chain F from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m F   4 LMNIKDIKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLKN 265
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  

Chain G from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m G   4 LMNIKDIKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLKN 265
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263  

Chain H from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh....hhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhhhhhhhhhh...eeeee.................eeeee...hhhhhh.....eeee..eeeee.hhhhhhhhhhhhhh..eeee.eeeeeeeee..eeeeeeeeehhhhhhh.....eeeeeeeeee.hhhhhhhhhhhhhhh............hhhhhhhhhhhhh.eee..eee.hhhhhhhh........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4m H   6 NIKDIKLNADETKTTKAILKASFDMWLDIVEADVVIVGAGPSGLTCARYLAKEGFKVVVLERHLAFGGGTWGGGMGFPYIVVEEPADELLREVGIKLIDMGDGYYVADSVEVPAKLAVAAMDAGAKILTGIVVEDLILREDGVAGVVINSYAIERAGLHIDPLTIRSKVVVDATGHEASIVNILVKKNKLEADVPGEKSMWAEKGENALLRNTREVYPNLFVCGMAANASHGGYRMGAIFGGMYLSGKLCAELITEKLK 264
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y4M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y4M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y4M)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    48F  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NHE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:89 - Pro A:90   [ RasMol ]  
    Glu B:89 - Pro B:90   [ RasMol ]  
    Glu C:89 - Pro C:90   [ RasMol ]  
    Glu D:89 - Pro D:90   [ RasMol ]  
    Glu E:89 - Pro E:90   [ RasMol ]  
    Glu F:89 - Pro F:90   [ RasMol ]  
    Glu G:89 - Pro G:90   [ RasMol ]  
    Glu H:89 - Pro H:90   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4y4m
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  THI4_METJA | Q58018
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  5.3.1.29
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  THI4_METJA | Q58018
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4Y4M)

(-) Related Entries Specified in the PDB File

4y4l 4y4n