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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST THI4-C205S
 
Authors :  X. Zhang, S. E. Ealick
Date :  10 Feb 15  (Deposition) - 09 Mar 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (4x)
Biol. Unit 2:  C,D  (4x)
Keywords :  Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhang, B. E. Eser, P. K. Chanani, T. P. Begley, S. E. Ealick
Structural Basis For Iron-Mediated Sulfur Transfer In Archael And Yeast Thiazole Synthases.
Biochemistry V. 55 1826 2016
PubMed-ID: 26919468  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00030

(-) Compounds

Molecule 1 - THIAMINE THIAZOLE SYNTHASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: THI4, ESP35, MOL1, YGR144W, G6620
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: THIAZOLE BIOSYNTHETIC ENZYME

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (4x): AB  
Biological Unit 2 (4x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
148N4Ligand/Ion(2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-3-OXIDANYLIDENE-PENTAN-2-YL]IMINOETHANOIC ACID
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
148N8Ligand/Ion(2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-3-OXIDANYLIDENE-PENTAN-2-YL]IMINOETHANOIC ACID
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
148N8Ligand/Ion(2E)-2-[(2S,4R)-5-[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-4-OXIDANYL-3-OXIDANYLIDENE-PENTAN-2-YL]IMINOETHANOIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:72 , GLY A:74 , SER A:75 , SER A:76 , ILE A:96 , GLU A:97 , SER A:98 , SER A:99 , GLY A:104 , GLY A:105 , CYS A:169 , VAL A:170 , ASP A:207 , PRO A:208 , THR A:234 , THR A:235 , GLY A:236 , HIS A:237 , PHE A:241 , GLY A:290 , MET A:291 , ARG A:301 , MET A:302 , GLY A:303 , THR A:305 , PHE A:306 , MET A:309 , HOH A:503 , HOH A:522 , HOH A:527 , HOH A:530 , HOH A:532binding site for residue 48N A 401
2AC2SOFTWAREVAL B:71 , GLY B:72 , GLY B:74 , SER B:75 , SER B:76 , ILE B:96 , GLU B:97 , SER B:98 , SER B:99 , GLY B:104 , GLY B:105 , CYS B:169 , VAL B:170 , ASP B:207 , PRO B:208 , THR B:234 , THR B:235 , GLY B:236 , HIS B:237 , PHE B:241 , GLY B:290 , MET B:291 , ARG B:301 , MET B:302 , GLY B:303 , THR B:305 , PHE B:306 , MET B:309 , HOH B:502 , HOH B:509 , HOH B:524 , HOH B:525 , HOH B:532 , HOH B:541 , HOH B:573binding site for residue 48N B 401
3AC3SOFTWAREGLY C:72 , GLY C:74 , SER C:75 , SER C:76 , ILE C:96 , GLU C:97 , SER C:98 , SER C:99 , GLY C:104 , GLY C:105 , CYS C:169 , VAL C:170 , ASP C:207 , PRO C:208 , THR C:234 , THR C:235 , GLY C:236 , HIS C:237 , PHE C:241 , PHE C:244 , GLY C:290 , MET C:291 , ARG C:301 , MET C:302 , GLY C:303 , THR C:305 , PHE C:306 , MET C:309 , HOH C:501 , HOH C:519 , HOH C:522 , HOH C:532 , HOH C:551binding site for residue 48N C 401
4AC4SOFTWAREGLY D:72 , GLY D:74 , SER D:75 , SER D:76 , ILE D:96 , GLU D:97 , SER D:98 , SER D:99 , GLY D:104 , GLY D:105 , CYS D:169 , VAL D:170 , ASP D:207 , PRO D:208 , THR D:234 , THR D:235 , GLY D:236 , HIS D:237 , PHE D:241 , GLY D:290 , MET D:291 , ARG D:301 , MET D:302 , GLY D:303 , THR D:305 , PHE D:306 , MET D:309 , HOH D:501 , HOH D:525 , HOH D:527 , HOH D:539 , HOH D:567binding site for residue 48N D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Y4L)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Lys A:120 -Pro A:121
2Lys B:120 -Pro B:121
3Lys C:120 -Pro C:121
4Lys D:120 -Pro D:121

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Y4L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Y4L)

(-) Exons   (0, 0)

(no "Exon" information available for 4Y4L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhee.eeee..hhhhhhhhhhhhhhh....eeeee..................eeee..hhhhhhhh....ee...eeee.hhhhhhhhhhhhhhh...eeeee.eeeeeeeee........eeeeeeeeehhhhh.........eeeee................eeee.........hhhhhhhhhhh...........hhhhhhhhhhhhhee......eee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4l A  22 VTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTCSMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201||     212       222       232       242       252       262       272       282       292       302       312       322   
                                                                                                                                                                                                              202|                                                                                                                         
                                                                                                                                                                                                               204                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhee.eeee..hhhhhhhhhhhhhhh....eeee...................eeee..hhhhhhhh....ee...eeee.hhhhhhhhhhhhhhh...eeee..eeeeeeee....eeeeeeeehhhhh.........eeeee................eeee.........hhhhhhhhhhh..........hhhhhhhhhhhhhee......eee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4l B  22 VTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTVAGVVTNWTLVTQAHGTCSMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 326
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      |187       197    || 208       218       228       238       248    || 259       269       279       289       299       309       319       
                                                                                                                                                                                      178|              202|                                              253|                                                                       
                                                                                                                                                                                       185               204                                               255                                                                       


Chain C from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................hhhhhhhhhhhhhhhhhhhhhee.eeee..hhhhhhhhhhhhhhh....eeee...................eeee..hhhhhhhhh...ee...eeee.hhhhhhhhhhhhhhh...eeee..eeeeeeeee.....eeeeeeeeehhhhh.........eeeee................eeee.........hhhhhhhhhhh...........hhhhhhhhhhhhhee......eee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4l C  23 THCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPGEVTVAGVVTNWTLVTQAHGTCSMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172     ||185       195      |206       216       226       236       246       256       266       276       286       296       306       316         
                                                                                                                                                                                     178|                 202|                                                                                                                         
                                                                                                                                                                                      182                  204                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhee.eeee..hhhhhhhhhhhhhhh....eeeee..................eeee..hhhhhhhh....ee...eeee.hhhhhhhhhhhhhhh...eeeee.eeeeeeeee........eeeeeeeeehhhhh.........eeeee................eeee.........hhhhhhhhhhh...........hhhhhhhhhhhhhee......eee.hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y4l D  22 VTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTCSMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 325
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201||     212       222       232       242       252       262       272       282       292       302       312       322   
                                                                                                                                                                                                              202|                                                                                                                         
                                                                                                                                                                                                               204
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Y4L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Y4L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Y4L)

(-) Gene Ontology  (12, 12)

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  4y4l
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 Related Entries

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        THI4_YEAST | P32318: 3fpz

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