4Y2L - JenaLib

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Title :   STRUCTURE OF CFA/I PILI MAJOR SUBUNIT CFAB TRIMER

Authors :   R. Bao, D. Xia

Date :   10 Feb 15 (Deposition) - 10 Aug 16 (Release) - 10 Aug 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D,E  (1x)
Biol. Unit 2: B,C,F  (1x)

Keywords :   Enterotoxigenic Escherichia Coli, Periplasmic Chaperone, Major Pilin, Self-Assembly, Fimbriae, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Bao, S. J. Savarino, D. Xia
Periplasmic Chaperone Cfaa Of Cfa/I Fimbriae Functions To Maintain Assembly Potency And Prevent Self-Polymerization O Pilin Subunits
To Be Published
PubMed: search

Molecule 1 - CFA/I FIMBRIAL SUBUNIT B
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 25-170
	Gene	:	CFAB, ETEC_P948_0400
	Organism Taxid	:	316401
	Strain	:	H10407 / ETEC
	Synonym	:	CFA/I ANTIGEN,CFA/I PILIN,COLONIZATION FACTOR ANTIGEN I SUBUNIT B

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D	E
Biological Unit 2 (1x)	:		B	C			F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	IPA	4	Ligand/Ion	ISOPROPYL ALCOHOL

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	IPA	3	Ligand/Ion	ISOPROPYL ALCOHOL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	IPA	1	Ligand/Ion	ISOPROPYL ALCOHOL

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:62 , PRO A:66 , ILE A:80 , SER A:81 , VAL A:82 , LEU A:89	binding site for residue IPA A 201
2	AC2	SOFTWARE	SER C:81 , SER C:83 , VAL C:118 , SER C:120 , ALA D:105	binding site for residue IPA C 201
3	AC3	SOFTWARE	GLU C:41 , HOH C:347	binding site for residue CA F 202
4	AC4	SOFTWARE	SER A:10 , ALA A:24 , LEU A:25 , HOH A:369 , LYS D:30 , HOH D:362 , HOH D:387 , LYS E:3	binding site for residue IPA D 201
5	AC5	SOFTWARE	PRO F:66 , SER F:81 , VAL F:82 , LEU F:89	binding site for residue IPA A 202

(no "SS Bond" information available for 4Y2L)

(no "Cis Peptide Bond" information available for 4Y2L)

(no "SAP(SNP)/Variant" information available for 4Y2L)

(no "PROSITE Motif" information available for 4Y2L)

(no "Exon" information available for 4Y2L)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...eeeee........eee..ee....ee..eeeeeeeee......eeeee....eeee..eeeeeeeeeeee..ee.....eee.....hhhhhh.......eeeeeee...........eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y2l A   1 HEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee.............ee....ee..eeeeeeeee......eeeee....eeee..eeeeeeeeeeee..ee.....eeehhhhhhhhhhh.......eeeeeee.............ee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y2l B   0 HHEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139

Chain C from PDB  Type:PROTEIN  Length:147
                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeee............eee....eee.eeeeeeeee......eeeee....eeee..eeeeeeeeeeee..ee.....eeehhhhhh............eeeeeee.............ee....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y2l C   1 HEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain D from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeee...eeeee........eee..ee....ee..eeeeeeeee......eeeee....eeee..eeeeeeeeeeee..ee.....eeehhhhhh............eeeeeee...........eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y2l D  -2 HHHHEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147

Chain E from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeeee...eeeee........eeeeeee....eee.eeeeeeeee.....eeeeee....eeee..eeeeeeeeeeee..ee.....eeehhhhhhhhhhh.......eeeeeee...........eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4y2l E  -2 HHHHEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147

Chain F from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeee.............ee....ee..eeeeeeeee.....eeeeee....eeee......eeeeeeee..ee.....eee.hhhhhhhhhh.......eeeeeee.............ee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4y2l F  -1 HHHEKNITVTASVDPVIDLLQADGNALPSAVKLAYSPASKTFESYRVMTQVHTNDATKKVIVKLADTPQLTDVLNSTVQMPISVSWGGQVLSTTAKEFEAAALGYSASGVNGVSSSQELVISAAPKTAGTAPTAGNYSGVVSLVMTLGS 147
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4Y2L)

(no "CATH Domain" information available for 4Y2L)

(no "Pfam Domain" information available for 4Y2L)

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Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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