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(-) Description

Title :  TRANSALDOLASE VARIANT E60Q/F132Y FROM T. ACIDOPHILUM IN COMPLEX WITH DHA SCHIFF BASE AND G3P
 
Authors :  V. Sautner, K. Tittmann
Date :  04 Feb 15  (Deposition) - 30 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (2x)
Keywords :  Transferase, Tim Barrel, Schiff Base (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Sautner, M. M. Friedrich, A. Lehwess-Litzmann, K. Tittmann
Converting Transaldolase Into Aldolase Through Swapping Of The Multifunctional Acid-Base Catalyst: Common And Divergen Catalytic Principles In F6P Aldolase And Transaldolase.
Biochemistry V. 54 4475 2015
PubMed-ID: 26131847  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00283

(-) Compounds

Molecule 1 - PROBABLE TRANSALDOLASE
    Chains: A, B, C, D, E
    EC Number: 2.2.1.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TAL, TA0616
    Mutation: YES
    Organism Scientific: THERMOPLASMA ACIDOPHILUM (STRAIN ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
    Organism Taxid: 273075
    Strain: ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (2x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric Unit (4, 13)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2G3P2Ligand/IonSN-GLYCEROL-3-PHOSPHATE
3GOL5Ligand/IonGLYCEROL
4PDO2Ligand/Ion1,3-PROPANDIOL
Biological Unit 1 (4, 26)
No.NameCountTypeFull Name
1ACT8Ligand/IonACETATE ION
2G3P4Ligand/IonSN-GLYCEROL-3-PHOSPHATE
3GOL10Ligand/IonGLYCEROL
4PDO4Ligand/Ion1,3-PROPANDIOL

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP B:6 , ASN B:28 , TYR B:132 , ARG B:135 , SER B:167 , ARG B:169 , PDO B:301 , HOH B:479binding site for residue G3P B 302
02AC2SOFTWAREARG B:169 , ASN B:170 , HOH B:420 , HOH B:442 , HOH B:509 , ARG D:169 , ASN D:170 , HOH D:481binding site for residue ACT B 304
03AC3SOFTWAREASP C:6 , TYR C:132 , ARG C:135 , ALA C:166 , SER C:167 , ARG C:169 , PDO C:301 , HOH C:443 , HOH C:471binding site for residue G3P C 302
04AC4SOFTWAREASP C:137 , ASN C:170 , ILE C:172 , HIS C:173 , ARG C:176 , HOH C:412binding site for residue GOL C 303
05AC5SOFTWAREARG C:169 , ASN C:170 , HOH C:414 , HOH C:501binding site for residue ACT C 304
06AC6SOFTWAREARG A:169 , ASN A:170 , HOH A:424 , ARG E:169 , ASN E:170 , HOH E:420 , HOH E:443binding site for residue ACT E 302
07AC7SOFTWAREARG E:151 , PHE E:154 , ASN E:155 , ILE E:158 , ILE E:159 , LYS E:160 , HOH E:433binding site for residue ACT E 303
08AC8SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
09AC9SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
10AD1SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
11AD2SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
12AD3SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
13AD4SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
14AD5SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
15AD6SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
16AD7SOFTWAREASP A:137 , ASN A:170 , ILE A:172 , HIS A:173 , ARG A:176 , HOH A:407 , ASP E:137 , ASN E:170 , ILE E:172 , HIS E:173 , ARG E:176 , HOH E:408binding site for residues GOL A 301 and GOL E 301
17AD8SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , VAL B:59 , GLN B:60 , VAL B:61 , VAL B:84 , VAL B:85 , ILE B:87 , ASN B:108 , SER B:130 , G3P B:302 , HOH B:405binding site for Di-peptide PDO B 301 and LYS B 86
18AD9SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
19AE1SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
20AE2SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
21AE3SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
22AE4SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
23AE5SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
24AE6SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
25AE7SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
26AE8SOFTWAREASP B:6 , THR B:26 , THR B:27 , ASN B:28 , LYS B:86 , ASN B:108 , SER B:130 , ASP B:137 , ASN B:170 , ILE B:172 , HIS B:173 , ARG B:176 , G3P B:302 , HOH B:407 , ASP D:137 , ASN D:170 , ILE D:172 , HIS D:173 , ARG D:176 , HOH D:408binding site for residues GOL B 303 and GOL D 301
27AE9SOFTWAREASP C:6 , THR C:26 , THR C:27 , ASN C:28 , VAL C:59 , GLN C:60 , VAL C:61 , VAL C:84 , VAL C:85 , ILE C:87 , ASN C:108 , SER C:130 , G3P C:302 , HOH C:406binding site for Di-peptide PDO C 301 and LYS C 86

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XZ9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XZ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XZ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XZ9)

(-) Exons   (0, 0)

(no "Exon" information available for 4XZ9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhh...hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xz9 A   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVQVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPYVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhh...hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeehhhhhh....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xz9 B   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVQVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPYVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain C from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh..eeeehhhhhhhh...hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhhh.hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xz9 C   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVQVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPYVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   


Chain D from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhh..hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xz9 D   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVQVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPYVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   


Chain E from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhh....hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xz9 E   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVQVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPYVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLI 222
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XZ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XZ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XZ9)

(-) Gene Ontology  (6, 6)

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        TAL_THEAC | Q9HKI3: 3s0c 3s1u 3s1v 3s1w 3s1x

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3soc