3S1U - JenaLib

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Title :   TRANSALDOLASE FROM THERMOPLASMA ACIDOPHILUM IN COMPLEX WITH D-ERYTHROSE 4-PHOSPHATE

Authors :   A. Lehwess-Litzmann, P. Neumann, C. Parthier, K. Tittmann

Date :   16 May 11 (Deposition) - 24 Aug 11 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E  (2x)

Keywords :   Alpha-Beta Barrel, Domain Swapping, Protein Dynamics, Conformational Selection, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Lehwess-Litzmann, P. Neumann, C. Parthier, S. Ludtke, R. Golbik, R. Ficner, K. Tittmann
Twisted Schiff Base Intermediates And Substrate Locale Revise Transaldolase Mechanism.
Nat. Chem. Biol. V. 7 678 2011
PubMed-ID: 21857661 | Reference-DOI: 10.1038/NCHEMBIO.633

Molecule 1 - PROBABLE TRANSALDOLASE
	Chains	:	A, B, C, D, E
	EC Number	:	2.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A(+)
	Expression System Strain	:	BL21(DE3)STAR
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TA0616, TAL
	Organism Scientific	:	THERMOPLASMA ACIDOPHILUM
	Organism Taxid	:	273075
	Strain	:	ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (2x)	:	A	B	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	E4P	5	Ligand/Ion	ERYTHOSE-4-PHOSPHATE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	E4P	10	Ligand/Ion	ERYTHOSE-4-PHOSPHATE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN C:170	BINDING SITE FOR RESIDUE CL C 224
2	AC2	SOFTWARE	ASP A:6 , ASN A:28 , LYS A:86 , PHE A:132 , ARG A:135 , SER A:167 , ARG A:169 , HOH A:308 , HOH A:578	BINDING SITE FOR RESIDUE E4P A 224
3	AC3	SOFTWARE	ASP C:6 , ASN C:28 , LYS C:86 , PHE C:132 , ARG C:135 , ALA C:166 , SER C:167 , ARG C:169 , HOH C:276 , HOH C:304 , HOH C:320 , HOH C:595	BINDING SITE FOR RESIDUE E4P C 225
4	AC4	SOFTWARE	ASP B:6 , ASN B:28 , LYS B:86 , PHE B:132 , ARG B:135 , ALA B:166 , SER B:167 , ARG B:169 , HOH B:241 , HOH B:246 , HOH B:579 , HOH B:582 , HOH B:594	BINDING SITE FOR RESIDUE E4P B 224
5	AC5	SOFTWARE	ASP D:6 , LYS D:86 , PHE D:132 , ARG D:135 , SER D:167 , ARG D:169 , HOH D:591	BINDING SITE FOR RESIDUE E4P D 224
6	AC6	SOFTWARE	ASP E:6 , LYS E:86 , PHE E:132 , ARG E:135 , ALA E:166 , SER E:167 , HOH E:244 , HOH E:309 , HOH E:401 , HOH E:585 , HOH E:586	BINDING SITE FOR RESIDUE E4P E 224

(no "SS Bond" information available for 3S1U)

(no "Cis Peptide Bond" information available for 3S1U)

(no "SAP(SNP)/Variant" information available for 3S1U)

Asymmetric Unit (2, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL_THEAC	24-32	5	A:24-32 B:24-32 C:24-32 D:24-32 E:24-32
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL_THEAC	83-100	5	A:83-100 B:83-100 C:83-100 D:83-100 E:83-100

Biological Unit 1 (2, 20)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSALDOLASE_1	PS01054	Transaldolase signature 1.	TAL_THEAC	24-32	10	A:24-32 B:24-32 C:24-32 D:24-32 E:24-32
2	TRANSALDOLASE_2	PS00958	Transaldolase active site.	TAL_THEAC	83-100	10	A:83-100 B:83-100 C:83-100 D:83-100 E:83-100

(no "Exon" information available for 3S1U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:218
 aligned with TAL_THEAC | Q9HKI3 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        
            TAL_THEAC     1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGATYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPD 218
               SCOP domains d3s1ua_ A: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh..eeeehhhhhhhh...hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------TRANSALDO--------------------------------------------------TRANSALDOLASE_2   ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1u A   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPD 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:217
 aligned with TAL_THEAC | Q9HKI3 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       
            TAL_THEAC     1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGATYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSP 217
               SCOP domains d3s1ub_ B: automated matches                                                                                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhh...hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------TRANSALDO--------------------------------------------------TRANSALDOLASE_2   --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1u B   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSP 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain C from PDB  Type:PROTEIN  Length:223
 aligned with TAL_THEAC | Q9HKI3 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
            TAL_THEAC     1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGATYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
               SCOP domains d3s1uc_ C: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhhh.hhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------TRANSALDO--------------------------------------------------TRANSALDOLASE_2   --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1u C   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain D from PDB  Type:PROTEIN  Length:223
 aligned with TAL_THEAC | Q9HKI3 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220   
            TAL_THEAC     1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGATYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
               SCOP domains d3s1ud_ D: automated matches                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhh..hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------TRANSALDO--------------------------------------------------TRANSALDOLASE_2   --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1u D   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPDGKLIL 223
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220

Chain E from PDB  Type:PROTEIN  Length:218
 aligned with TAL_THEAC | Q9HKI3 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        
            TAL_THEAC     1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGATYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPD 218
               SCOP domains d3s1ue_ E: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhh....eee.hhhhhhhhh....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeeehhhhhhhh..hhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhh..eeeehhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------TRANSALDO--------------------------------------------------TRANSALDOLASE_2   ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3s1u E   1 MKIFLDTANIDEIRTGVNWGIVDGVTTNPTLISKEAVNGKKYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKKVSPD 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: automated matches (54)

Thermoplasma acidophilum [TaxId: 273075] (5)

1a	d3s1ua_	A:
1b	d3s1ub_	B:
1c	d3s1uc_	C:
1d	d3s1ud_	D:
1e	d3s1ue_	E:

(no "CATH Domain" information available for 3S1U)

(no "Pfam Domain" information available for 3S1U)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E (TAL_THEAC | Q9HKI3)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004801	sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	Catalysis of the reaction: sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3s1u)

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	3s1u
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	TAL_THEAC \| Q9HKI3	:	3s0c 3s1v 3s1w 3s1x 4xz9

3s0c	TRANSALDOLASE FROM THERMOPLASMA ACIDOPHILUM IN THE RESTING STATE
3s1v
3s1w
3s1x

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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