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(-) Description

Title :  FACTOR VIIA IN COMPLEX WITH THE INHIBITOR 4-BROMO-2-METHOXYPHENOL
 
Authors :  A. Wei
Date :  10 Dec 14  (Deposition) - 25 Mar 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Glycoprotein, Hydrolase, Serine Protease, Plasma, Blood Coagulation Factor, Protein Inhibitor Complex, Calcium- Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. L. Cheney, J. M. Bozarth, W. J. Metzler, P. E. Morin, L. Mueller, J. A. Newitt, A. H. Nirschl, A. R. Rendina, J. K. Tamura, A. Wei, X. Wen, N. R. Wurtz, D. A. Seiffert, R. R. Wexler, E. S. Priestley
Discovery Of Novel P1 Groups For Coagulation Factor Viia Inhibition Using Fragment-Based Screening.
J. Med. Chem. V. 58 2799 2015
PubMed-ID: 25764119  |  Reference-DOI: 10.1021/JM501982K

(-) Compounds

Molecule 1 - FACTOR VIIA (HEAVY CHAIN)
    Chains: H
    EC Number: 3.4.21.21
    Engineered: YES
    Expression System: CRICETINAE
    Expression System Taxid: 10026
    Fragment: UNP RESIDUES 213-466
    Gene: F7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROCONVERTIN,SERUM PROTHROMBIN CONVERSION ACCELERATOR,SPCA
 
Molecule 2 - FACTOR VIIA (LIGHT CHAIN)
    Chains: L
    EC Number: 3.4.21.21
    Engineered: YES
    Expression System: CRICETINAE
    Expression System Taxid: 10026
    Fragment: UNP RESIDUES 150-204
    Gene: F7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROCONVERTIN,SERUM PROTHROMBIN CONVERSION ACCELERATOR,SPCA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
13Z71Ligand/Ion4-BROMO-2-METHOXYPHENOL
2CA1Ligand/IonCALCIUM ION
3GOL3Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP H:189 , SER H:190 , LYS H:192 , SER H:195 , SER H:214 , TRP H:215 , GLY H:219 , CYS H:220 , VAL H:227 , TYR H:228binding site for residue 3Z7 H 301
2AC2SOFTWAREGLU H:70 , ASP H:72 , GLU H:75 , GLU H:80 , HOH H:401 , HOH H:447binding site for residue CA H 302
3AC3SOFTWAREARG H:83 , ARG H:84 , HIS H:109 , GLN H:110binding site for residue SO4 H 303
4AC4SOFTWAREVAL H:35 , ASN H:37 , LYS H:60A , ILE H:60B , LYS H:60C , ASN H:60D , GOL H:309binding site for residue SO4 H 304
5AC5SOFTWARESER H:170B , ILE H:176 , HIS H:224 , PHE H:225 , VAL H:227 , HOH H:616binding site for residue SO4 H 305
6AC6SOFTWAREILE H:47 , ASN H:48 , GLN H:239 , HOH H:450 , HOH H:522 , HOH H:576 , HIS L:115binding site for residue SO4 H 306
7AC7SOFTWAREPHE H:59 , ASP H:60 , TRP H:61 , PRO H:96 , LEU H:251 , HOH H:472 , HOH H:546binding site for residue GOL H 307
8AC8SOFTWARECYS H:22 , GLU H:26 , CYS H:27 , LEU H:137 , ILE L:138binding site for residue GOL H 308
9AC9SOFTWARELEU H:41 , SO4 H:304binding site for residue GOL H 309

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:27
2H:42 -H:58
3H:122 -L:135
4H:168 -H:182
5H:191 -H:220
6L:91 -L:102
7L:98 -L:112
8L:114 -L:127

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe H:256 -Pro H:257

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X8S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X8S)

(-) Exons   (0, 0)

(no "Exon" information available for 4X8S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                          
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee..eeeeeeee....eeeehhhhhh...hhh.eeeee............eeeeeeeeeee............eeeee................hhhhhhhhhhhh.eeeeee..............eeeeeeeehhhhhhhhh.......eeee.........hhhhh..eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhhh.......eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4x8s H   16 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEPRPGVLLRAPFP  257
                                    25        35|       46        56    ||||62        72        82        92       102       112       122      129C|||||  139       150       160       170|||||  180   |   188       198       208       219 |     228       238       248         
                                              35|                     60A|||                                                                  129A|||||||          147|                  170A||||     184A 188A                           217| |                                     
                                               37                      60B||                                                                   129B||||||           149                   170B|||                                          219 |                                     
                                                                        60C|                                                                    129C|||||                                  170C||                                           221A                                     
                                                                         60D                                                                     129D||||                                   170I|                                                                                    
                                                                                                                                                  129E|||                                     175                                                                                    
                                                                                                                                                   129F||                                                                                                                            
                                                                                                                                                    129G|                                                                                                                            
                                                                                                                                                      134                                                                                                                            


Chain L from PDB  Type:PROTEIN  Length:55
                                                                                        
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..eeee.....eeee....eee......eee........hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                4x8s L   90 ICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIPILEKR  144
                                    99       109       119       129       139
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X8S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X8S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X8S)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe H:256 - Pro H:257   [ RasMol ]  
 

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  4x8s
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
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  FA7_HUMAN | P08709
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  3.4.21.21
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA7_HUMAN | P08709: 1bf9 1cvw 1dan 1dva 1f7e 1f7m 1fak 1ff7 1ffm 1j9c 1jbu 1kli 1klj 1nl8 1o5d 1qfk 1w0y 1w2k 1w7x 1w8b 1wqv 1wss 1wtg 1wun 1wv7 1ygc 1z6j 2a2q 2aei 2aer 2b7d 2b8o 2bz6 2c4f 2ec9 2f9b 2fir 2flb 2flr 2puq 2zp0 2zwl 2zzu 3ela 3th2 3th3 3th4 4ibl 4ish 4isi 4jyu 4jyv 4jzd 4jze 4jzf 4na9 4ng9 4nga 4x8t 4x8u 4x8v 4ylq 4yt6 4yt7 4z6a 4zma 4zxx 4zxy 5i46 5l2y 5l2z 5l30 5pa8 5pa9 5paa 5pab 5pac 5pae 5paf 5pag 5pai 5paj 5pak 5pam 5pan 5pao 5paq 5par 5pas 5pat 5pau 5pav 5paw 5pax 5pay 5pb0 5pb1 5pb2 5pb3 5pb4 5pb5 5pb6 5tqe 5tqf 5tqg 5u6j

(-) Related Entries Specified in the PDB File

4x8t 4x8u 4x8v