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(-) Description

Title :  CRYSTAL STRUCTURE OF APO S. AUREUS TARM
 
Authors :  L. J. Worrall, S. Sobhanifar, R. J. Gruninger, N. C. Strynadka
Date :  09 Dec 14  (Deposition) - 18 Feb 15  (Release) - 25 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Keywords :  Glycosyltransferase Gt-B Retaining Wall Teichoic Acid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Sobhanifar, L. J. Worrall, R. J. Gruninger, G. A. Wasney, M. Blaukopf, L. Baumann, E. Lameignere, M. Solomonson, E. D. Brown, S. G. Withers, N. C. Strynadka
Structure And Mechanism Of Staphylococcus Aureus Tarm, The Wall Teichoic Acid Alpha-Glycosyltransferase.
Proc. Natl. Acad. Sci. Usa V. 112 E576 2015
PubMed-ID: 25624472  |  Reference-DOI: 10.1073/PNAS.1418084112

(-) Compounds

Molecule 1 - TARM
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET41B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SA21178_0837
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS 21178
    Organism Taxid: 904724

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1SO416Ligand/IonSULFATE ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1SO424Ligand/IonSULFATE ION
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1SO424Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:8 , HIS A:9 , GLY A:227 , PRO A:228 , GLY A:229 , SER A:230binding site for residue SO4 A 501
02AC2SOFTWAREARG A:110 , TYR A:119 , LYS A:190 , TYR A:192binding site for residue SO4 A 502
03AC3SOFTWAREHIS A:9 , ASN A:203 , LYS A:233binding site for residue SO4 A 503
04AC4SOFTWAREARG A:124 , ARG A:140 , ARG A:143binding site for residue SO4 A 504
05AC5SOFTWAREASN A:180 , LYS A:190binding site for residue SO4 A 505
06AC6SOFTWAREHIS A:91 , THR A:116 , THR A:118binding site for residue SO4 A 506
07AC7SOFTWARELYS A:125 , LYS A:130 , ASN A:149binding site for residue SO4 A 507
08AC8SOFTWAREHIS A:91 , ARG A:95binding site for residue SO4 A 508
09AC9SOFTWAREASN B:180 , GLY B:189 , LYS B:190binding site for residue SO4 B 501
10AD1SOFTWAREHIS B:9 , GLY B:227 , PRO B:228 , GLY B:229 , SER B:230binding site for residue SO4 B 502
11AD2SOFTWAREARG B:110 , TYR B:119 , LYS B:190 , TYR B:192binding site for residue SO4 B 503
12AD3SOFTWAREARG B:124 , ARG B:143binding site for residue SO4 B 504
13AD4SOFTWAREHIS B:9 , ASN B:203 , LEU B:204 , LYS B:233binding site for residue SO4 B 505
14AD5SOFTWAREASP B:113 , THR B:116 , THR B:118 , SO4 B:508binding site for residue SO4 B 506
15AD6SOFTWARELYS B:125 , LYS B:130 , ASN B:149binding site for residue SO4 B 507
16AD7SOFTWAREHIS B:91 , ARG B:95 , SO4 B:506binding site for residue SO4 B 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X7P)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:425 -Tyr A:426
2Lys B:425 -Tyr B:426

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X7P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X7P)

(-) Exons   (0, 0)

(no "Exon" information available for 4X7P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh........eeehhhhhhhhhhhhh...hhhhhhhhhhhh..eeeee....eeeeee.....eeeeeeee..eeeeeeee..eeeeeeeee..eeeeeeee.....eeeeeee.....eeeeeee......eeeeee....eee.hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhh......eeeeee..............hhhhhhhhhhhhhh.eeee.hhhhhhhhhhhh....eee..................eeeee...hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeee...hhhhhhh...eeee.......hhhhhhhhhh...eeeee...hhhhhh.....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x7p A   1 MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTGTYIAYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHKNAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYSTESILEKWLNLFNS 493
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490   


Chain B from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh........eeehhhhhhhhhhhhh...hhhhhhhhhhhh..eeeee....eeeeee.....eeeeeeee..eeeeeeee..eeeeeeeee..eeeeeeee.....eeeeeee.....eeeeeee......eeeeee....eee.hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhh......eeeeee..............hhhhhhhhhhhhhh.eeee.hhhhhhhhhhhh....eee..................eeeee...hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhh....eeeee...hhhhhhh...eeee.......hhhhhhhhhh...eeeee...hhhhhh.....eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x7p B   1 MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTGTYIAYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHKNAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYSTESILEKWLNLFNS 493
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X7P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X7P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X7P)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4X7P)

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    Lys A:425 - Tyr A:426   [ RasMol ]  
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        A0A0J9X257_S | A0A0J9X257: 4x6l

(-) Related Entries Specified in the PDB File

4x6l 4x7m 4x7r