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(-) Description

Title :  CRYSTAL STRUCTURE OF S. AUREUS TARM G117R MUTANT IN COMPLEX WITH UDP AND UDP-GLCNAC
 
Authors :  L. J. Worrall, S. Sobhanifar, N. C. Strynadka
Date :  09 Dec 14  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Glycosyltransferase Gt-B Retaining Wall Teichoic Acid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Sobhanifar, L. J. Worrall, R. J. Gruninger, G. A. Wasney, M. Blaukopf, L. Baumann, E. Lameignere, M. Solomonson, E. D. Brown, S. G. Withers, N. C. Strynadka
Structure And Mechanism Of Staphylococcus Aureus Tarm, The Wall Teichoic Acid Alpha-Glycosyltransferase.
Proc. Natl. Acad. Sci. Usa V. 112 E576 2015
PubMed-ID: 25624472  |  Reference-DOI: 10.1073/PNAS.1418084112

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET41B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SA21178_0837
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS 21178
    Organism Taxid: 904724

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1UD11Ligand/IonURIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
2UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1UD1-1Ligand/IonURIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
2UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1UD11Ligand/IonURIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
2UDP-1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:324 , SER A:325 , ARG A:326 , LYS A:331 , GLY A:356 , TYR A:382 , THR A:383 , PRO A:386 , LEU A:407 , SER A:408 , GLU A:411 , HOH A:617 , HOH A:624 , HOH A:626 , HOH A:630binding site for residue UDP A 500
2AC2SOFTWAREGLY B:16 , GLY B:17 , LYS B:59 , HIS B:249 , VAL B:250 , LEU B:282 , ASN B:304 , ILE B:324 , SER B:325 , ARG B:326 , LYS B:331 , GLY B:356 , TYR B:382 , THR B:383 , PRO B:386 , TYR B:402 , GLU B:403 , GLY B:404 , GLN B:405 , GLY B:406 , LEU B:407 , SER B:408 , GLU B:411binding site for residue UD1 B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X7M)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:425 -Tyr A:426
2Lys B:425 -Tyr B:426

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X7M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X7M)

(-) Exons   (0, 0)

(no "Exon" information available for 4X7M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh........eeehhhhhhhhhhhhh...hhhhhhhhhhhh..eeeee.....eeeee.....eeeeeeee..eeeeeeee..eeeeeeeee..eeeeeeee.....eeeeeee.....eeeeeeee....eeeeeee.....ee.hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhh......eeeee...............hhhhhhhhhh.....eeee.hhhhhhhhhhhh....eee..................eeeee...hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.....eeeee...hhhhhhhh..eeee.......hhhhhhhhhh...eeee....hhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x7m A   1 MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTRTYIAYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHKNAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYSTESILEKWLNLFNS 493
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Chain B from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh........eeehhhhhhhhhhhhh...hhhhhhhhhhhh..eeeee.....eeeee.....eeeeeeee..eeeeeeee..eeeeeeeee..eeeeeeee.....eeeeeee.....eeeeeeee....eeeeeee....eee.hhhhhhhhhhhhhh......eeee.hhhhhhhhhh......eeeee...............hhhhhhhhhh.....eeee.hhhhhhhhhhhh....eee..................eeeee...hhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh.....eeeee...hhhhhhhh..eeee........hhhhhhhhh...eeee....hhhhhh.....eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x7m B   1 MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTRTYIAYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHKNAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSVKDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYSTESILEKWLNLFNS 493
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X7M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X7M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X7M)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4X7M)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0J9X256_S | A0A0J9X256: 4x7r

(-) Related Entries Specified in the PDB File

4x6l 4X6L IS THE NATIVE TRIMER IN COMPLEX WITH UDP
4x7p
4x7r