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(-) Description

Title :  SELECTION OF FRAGMENTS FOR KINASE INHIBITOR DESIGN: DECORATION IS KEY
 
Authors :  P. Czodrowski, G. Hoelzemann, G. Barnickel, H. Greiner, D. Musil
Date :  30 Nov 14  (Deposition) - 24 Dec 14  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Protein Kinase, Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Czodrowski, G. Holzemann, G. Barnickel, H. Greiner, D. Musil
Selection Of Fragments For Kinase Inhibitor Design: Decoration Is Key.
J. Med. Chem. V. 58 457 2015
PubMed-ID: 25437144  |  Reference-DOI: 10.1021/JM501597J

(-) Compounds

Molecule 1 - ANGIOPOIETIN-1 RECEPTOR
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: KINASE DOMAIN, UNP RESIDUES 802-1122
    Gene: TEK, TIE2, VMCM, VMCM1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ENDOTHELIAL TYROSINE KINASE,TUNICA INTERNA ENDOTHELIAL CELL KINASE,TYROSINE KINASE WITH IG AND EGF HOMOLOGY DOMAINS-2,TYROSINE- PROTEIN KINASE RECEPTOR TEK,TYROSINE-PROTEIN KINASE RECEPTOR TIE-2, HTIE2,P140 TEK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
13WR1Ligand/Ion1-[4-(4-AMINO-5-OXOPYRIDO[2,3-D]PYRIMIDIN-8(5H)-YL)PHENYL]-3-[2-FLUORO-5-(TRIFLUOROMETHYL)PHENYL]UREA

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:853 , GLU A:872 , VAL A:875 , ILE A:902 , GLU A:903 , TYR A:904 , ALA A:905 , PHE A:960 , HIS A:962 , LEU A:971 , ILE A:980 , ALA A:981 , ASP A:982 , PHE A:983binding site for residue 3WR A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X3J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X3J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X3J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X3J)

(-) Exons   (0, 0)

(no "Exon" information available for 4X3J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee...eee..hhhhhhh.............eee.....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee..........hhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhh............hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4x3j A  838 VLKARMDAAIKELEVLCKLGHHPNIINLLLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERKTYVNTTLYEKFTYAGID 1117
                                || 854||     880       898       908       918       928       938       948       958       968       978     |1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113    
                              842|  855|              889|                                                                                   984|                                                                                                                     
                               850   872               898                                                                                   1000
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X3J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X3J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X3J)

(-) Gene Ontology  (74, 74)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TIE2_HUMAN | Q02763: 1fvr 2gy5 2gy7 2oo8 2osc 2p4i 2wqb 3bea 3l8p 4k0v 5mya 5myb 5utk

(-) Related Entries Specified in the PDB File

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