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(-) Description

Title :  A MICRO-PATTERNED SILICON CHIP AS SAMPLE HOLDER FOR MACROMOLECULAR CRYSTALLOGRAPHY EXPERIMENTS WITH MINIMAL BACKGROUND SCATTERING
 
Authors :  P. Roedig, I. Vartiainen, R. Duman, S. Panneerselvam, N. Stuebe, O. Lor M. Warmer, G. Sutton, D. I. Stuart, E. Weckert, C. David, A. Wagner, A. M
Date :  27 Nov 14  (Deposition) - 10 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Protein, Microcrystals, Polyhedra (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Roedig, I. Vartiainen, R. Duman, S. Panneerselvam, N. Stube, O. Lorbeer, M. Warmer, G. Sutton, D. I. Stuart, E. Weckert, C. David, A. Wagner, A. Meents
A Micro-Patterned Silicon Chip As Sample Holder For Macromolecular Crystallography Experiments With Minimal Background Scattering.
Sci Rep V. 5 10451 2015
PubMed-ID: 26022615  |  Reference-DOI: 10.1038/SREP10451

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell: INSECT
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PBACPAK9
    Expression System Taxid: 7108
    Organism Scientific: OPEROPHTERA BRUMATA CYPOVIRUS 18
    Organism Taxid: 352244

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 8)

Asymmetric/Biological Unit (6, 8)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CL1Ligand/IonCHLORIDE ION
4GTP1Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
5MG2Ligand/IonMAGNESIUM ION
6MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:31binding site for residue CL A 301
2AC2SOFTWAREGLU A:96binding site for residue MG A 302
3AC3SOFTWAREGTP A:304 , HOH A:410 , HOH A:551binding site for residue MG A 303
4AC4SOFTWAREARG A:18 , HIS A:170 , TYR A:172 , ASN A:173 , LYS A:184 , MG A:303 , ATP A:305 , HOH A:410 , HOH A:430 , HOH A:494 , HOH A:544binding site for residue GTP A 304
5AC5SOFTWARELYS A:152 , HIS A:154 , ASP A:156 , GLY A:157 , ILE A:159 , LYS A:184 , GTP A:304 , HOH A:415 , HOH A:421 , HOH A:430 , HOH A:442 , HOH A:465 , HOH A:469 , HOH A:470 , HOH A:508binding site for residue ATP A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X35)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X35)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4X35)

(-) Exons   (0, 0)

(no "Exon" information available for 4X35)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeeeee.hhhhh........hhhhhhhhhhhhhh................eeeeee...eeeeeeeeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeeee............hhhhhhhhhhhheeeeeee.hhhhhhhhh.......ee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x35 A   1 xADVAGTSNRDFRGREQRLYNSEQYNYNNSLNGEVSLWVYAYYSDGSVLVRNCNSQYKVGISECFKSLKEVRVGQNNDPYDEQEVNNGVYYPNGGEPTKFHSNAKPRAIQIIFSPSVNVHTIKmAKGNSVSIPKDYLQRSHPWEATGVKYRKIHVDGEIVGYSHYFELPHEYNSISLSVSGVHKNPSSYNVAAPHNImDVFQSCDLALKFSNRYWCELELINHYISAYAYPYLDINNHKYGVPLNGRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120   |   130       140       150       160       170       180       190       200       210       220       230       240        
                            |                                                                                                                        124-MSE                                                                   198-MSE                                              
                            1-ACE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X35)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X35)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X35)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q30C70_9REOV | Q30C70: 5mqw
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        Q30C70_9REOV | Q30C70: 4ots 4otv 5a9p

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4X35)