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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOLATED OPEROPHTERA BRUMATA CPV18
 
Authors :  D. I. Stuart, G. C. Sutton, D. Axford, X. Ji
Date :  14 Feb 14  (Deposition) - 14 May 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Microcrystals, Polyhedra, Occlusion Body, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Axford, X. Ji, D. I. Stuart, G. Sutton
In Cellulo Structure Determination Of A Novel Cypovirus Polyhedrin.
Acta Crystallogr. , Sect. D V. 70 1435 2014
PubMed-ID: 24816111  |  Reference-DOI: 10.1107/S1399004714004714

(-) Compounds

Molecule 1 - POLYHEDRIN
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: POPIN
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Organism Scientific: OPEROPHTERA BRUMATA CYPOVIRUS 18
    Organism Taxid: 352244

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CL1Ligand/IonCHLORIDE ION
4GTP1Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
5MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1ACE3Mod. Amino AcidACETYL GROUP
2ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3CL-1Ligand/IonCHLORIDE ION
4GTP3Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
5MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:2 , LEU A:31 , HOH A:409BINDING SITE FOR RESIDUE CL A 301
2AC2SOFTWAREASN A:9 , ARG A:10 , ARG A:18 , HIS A:170 , TYR A:172 , ASN A:173 , LYS A:184 , ATP A:303 , MG A:304 , HOH A:442 , HOH A:511 , HOH A:534 , HOH A:542 , HOH A:544 , HOH A:567 , HOH A:599BINDING SITE FOR RESIDUE GTP A 302
3AC3SOFTWARETYR A:25 , LYS A:152 , HIS A:154 , ASP A:156 , GLY A:157 , ILE A:159 , LYS A:184 , GTP A:302 , HOH A:498 , HOH A:520 , HOH A:554 , HOH A:576 , HOH A:582 , HOH A:586 , HOH A:599 , HOH A:634BINDING SITE FOR RESIDUE ATP A 303
4AC4SOFTWAREGTP A:302 , HOH A:511 , HOH A:527BINDING SITE FOR RESIDUE MG A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OTS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OTS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OTS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OTS)

(-) Exons   (0, 0)

(no "Exon" information available for 4OTS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeeeee..............hhhhhhhhhhhhhh................eeeeee...eeeeeeeeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeeee............hhhhhhhhhhhheeeeeee.hhhhhhhhh.......ee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ots A   1 xADVAGTSNRDFRGREQRLYNSEQYNYNNSLNGEVSLWVYAYYSDGSVLVRNCNSQYKVGISECFKSLKEVRVGQNNDPYDEQEVNNGVYYPNGGEPTKFHSNAKPRAIQIIFSPSVNVHTIKMAKGNSVSIPKDYLQRSHPWEATGVKYRKIHVDGEIVGYSHYFELPHEYNSISLSVSGVHKNPSSYNVAAPHNIMDVFQSCDLALKFSNRYWCELELINHYISAYAYPYLDINNHKYGVPLNGRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
                            |                                                                                                                                                                                                                                                       
                            1-ACE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OTS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OTS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OTS)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q30C70_9REOV | Q30C70: 5mqw
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        Q30C70_9REOV | Q30C70: 4otv 4x35 5a9p

(-) Related Entries Specified in the PDB File

4otv