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(-) Description

Title :  MUTANT K20E OF RNA DEPENDENT RNA POLYMERASE 3D FROM FOOT-AND-MOUTH DISEASE VIRUS COMPLEXED WITH RNA
 
Authors :  N. Verdaguer, C. Ferrer-Orta
Date :  20 Nov 14  (Deposition) - 06 May 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Rna Dependent Rna Polymerase, Nuclear Localization Signal, Picornavirus, Closed Right-Hand, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Ferrer-Orta, I. De La Higuera, F. Caridi, M. T. Sanchez-Aparicio E. Moreno, C. Perales, K. Singh, S. G. Sarafianos, F. Sobrino, E. Domingo, N. Verdaguer
Multifunctionality Of A Picornavirus Polymerase Domain: Nuclear Localization Signal And Nucleotide Recognition.
J. Virol. V. 89 6848 2015
PubMed-ID: 25903341  |  Reference-DOI: 10.1128/JVI.03283-14

(-) Compounds

Molecule 1 - RNA DEPENDENT-RNA POLYMERASE 3D
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Plasmid: PET28A
    Expression System Taxid: 866768
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1858-2328
    Gene: CDS
    Mutation: YES
    Organism Scientific: FOOT-AND-MOUTH DISEASE VIRUS
    Organism Taxid: 12110
 
Molecule 2 - RNA TEMPLATE
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - RNAPRIMER
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:238 , ASP A:240 , ASP A:339binding site for residue MN A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WZQ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WZQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WZQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4WZQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:476
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.............eehhhhhhhh..eee..............hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh...............hhhhhh.hhhhhh.......hhhhhhhhhhhhh......eeeee...eeehhhhhhh...eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh..eee.ee........hhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhh.....ee.................ee..eeeee......eeee.hhhhhhhhhhee...hhhhhhhhhhhhhh..hhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wzq A   1 GLIVDTRDVEERVHVMRKTELAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAALEHH 476
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470      


Chain B from PDB  Type:RNA  Length:8
                                        
                 4wzq B 903 AUGGGCCC 910


Chain C from PDB  Type:RNA  Length:7
                                       
                 4wzq C 914 UGGGCCC 920
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WZQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WZQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WZQ)

(-) Gene Ontology  (47, 83)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A4H1Z0_9PICO | A4H1Z0: 5n8x 5n95
        POLG_FMDVS | P03311: 1qgc 4wyl 4wyw 4wzm 4x2b 5jxs

(-) Related Entries Specified in the PDB File

1u09 1U09 CONTAINS THE SAME PROTEIN, BUT THE WILD TYPE AND WITHOUT RNA
1wne 1WNE CONTAINS THE SAME PROTEIN, BUT THE WILD TYPE