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(-) Description

Title :  MUTANT K20E OF 3D POLYMERASE FROM FOOT-AND-MOUTH DISEASE VIRUS
 
Authors :  C. Ferrer-Orta, N. Verdaguer, I. De La Higuera, E. Domingo
Date :  18 Nov 14  (Deposition) - 06 May 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Closed-Right Hand Rna Dependent Rna Polymerase Picornavirus, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Ferrer-Orta, I. De La Higuera, F. Caridi, M. T. Sanchez-Aparicio E. Moreno, C. Perales, K. Singh, S. G. Sarafianos, F. Sobrino, E. Domingo, N. Verdaguer
Multifunctionality Of A Picornavirus Polymerase Domain: Nuclear Localization Signal And Nucleotide Recognition.
J. Virol. V. 89 6848 2015
PubMed-ID: 25903341  |  Reference-DOI: 10.1128/JVI.03283-14

(-) Compounds

Molecule 1 - RNA-DIRECTED RNA POLYMERASE 3D-POL
    Chains: A
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Fragment: UNP RESDIUES 1830-2299
    Mutation: YES
    Organism Common: FMDV
    Organism Scientific: FOOT-AND-MOUTH DISEASE VIRUS
    Organism Taxid: 12120
    Other Details: THIS POLYMERASE CONTAIN THE MUTATION K20E
    Strain: ISOLATE -/SPAIN/S8C1SANTAPAU/1970 SEROTYPE C

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
13PO1Ligand/IonTRIPHOSPHATE
2ACT1Ligand/IonACETATE ION
3GOL4Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:168 , LYS A:172 , ARG A:179 , ALA A:243 , HOH A:737binding site for residue 3PO A 501
2AC2SOFTWARETYR A:323 , GLU A:324 , TYR A:346binding site for residue GOL A 502
3AC3SOFTWAREGLY A:129 , LEU A:131 , GLY A:140 , HOH A:805binding site for residue GOL A 503
4AC4SOFTWARETRP A:237 , ASP A:238 , PRO A:366 , ALA A:367 , ASP A:368 , PHE A:374 , VAL A:375binding site for residue GOL A 504
5AC5SOFTWARETYR A:81 , PRO A:209 , ASN A:312 , LEU A:328 , TYR A:331 , THR A:332 , MET A:333 , HOH A:727 , HOH A:736 , HOH A:774binding site for residue GOL A 505
6AC6SOFTWAREMET A:111 , GLU A:112 , ARG A:128 , ILE A:189 , HOH A:844binding site for residue ACT A 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WYW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:119 -Pro A:120

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WYW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WYW)

(-) Exons   (0, 0)

(no "Exon" information available for 4WYW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee.......eeehhhhhhhh..eee..............hhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh......................hhhhhee....eehhhhhhhhhhhhh......eeeee...eeehhhhhh....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhh..hhhhhhhhh..eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhh........eeeee..eeeeee........hhhhhhh....eee............hhhh.ee..eeeee......eeee.hhhhhhhhhheee..hhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wyw A   1 GLIVDTRDVEERVHVMRKTELAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRRCAADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFENGTVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRMMIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAQYRNVWDVDYSAFDANHCSDAMNIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNNIYVLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGLAVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDAAAALEHHHH 479
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WYW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WYW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WYW)

(-) Gene Ontology  (47, 47)

Asymmetric/Biological Unit(hide GO term definitions)

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  POLG_FMDVS | P03311
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POLG_FMDVS | P03311: 1qgc 4wyl 4wzm 4wzq 4x2b 5jxs

(-) Related Entries Specified in the PDB File

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