Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  PDXS (G. STEAROTHERMOPHILUS) CO-CRYSTALLIZED WITH R5P IN THE PRESENCE OF AMMONIA.
 
Authors :  J. L. Smith, A. M. Smith
Date :  14 Nov 14  (Deposition) - 14 Jan 15  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Pyridoxal 5-Phosphate, Glutamine Amidotransferase, Vitamin B6, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Smith, W. C. Brown, E. Harms, J. L. Smith
Structural Investigation Into The Mechanism Of The Synthase Subunit Of Plps
J. Biol. Chem. 2015
PubMed: search

(-) Compounds

Molecule 1 - PYRIDOXAL BIOSYNTHESIS LYASE PDXS
    Chains: A, C, E, G, I, J, K, L
    EC Number: 4.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PDXS, GK0011
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426)
    Organism Taxid: 235909
    Strain: HTA426
 
Molecule 2 - PYRIDOXAL BIOSYNTHESIS LYASE PDXS
    Chains: B, D, H
    EC Number: 4.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PDXS, GK0011
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426)
    Organism Taxid: 235909
    Strain: HTA426
 
Molecule 3 - PYRIDOXAL BIOSYNTHESIS LYASE PDXS
    Chains: F
    EC Number: 4.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PDXS, GK0011
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426)
    Organism Taxid: 235909
    Strain: HTA426

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 28)

Asymmetric/Biological Unit (6, 28)
No.NameCountTypeFull Name
13ZL1Mod. Amino AcidN~6~-[(1Z)-4-AMINO-3-OXOPENTA-1,4-DIEN-1-YL]-L-LYSINE
2CAC5Ligand/IonCACODYLATE ION
3EDO3Ligand/Ion1,2-ETHANEDIOL
4L5P8Mod. Amino Acid(2S)-2-AZANYL-6-[[(3R,4R)-3,4-BIS(OXIDANYL)-2-OXIDANYLIDENE-5-PHOSPHONOOXY-PENTYL]AMINO]HEXANOICACID
5PO44Ligand/IonPHOSPHATE ION
6R5P7Ligand/IonRIBOSE-5-PHOSPHATE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:115 , ARG A:137 , ARG A:138 , HOH A:462 , LYS G:187binding site for residue CAC A 301
02AC2SOFTWAREGLY B:153 , GLY B:214 , GLY B:235 , HOH B:426binding site for residue PO4 B 301
03AC3SOFTWAREHIS B:115 , ARG B:130 , GLU B:134 , ARG B:137 , ARG B:138 , HOH B:495 , LYS J:187binding site for residue R5P B 302
04AC4SOFTWAREHIS C:115 , GLU C:134 , ARG C:137 , ARG C:138 , HOH C:476 , HOH C:496 , LYS H:187binding site for residue CAC C 301
05AC5SOFTWAREGLY C:85 , ASP C:111 , PHE C:114 , HIS C:115 , ILE C:116 , HOH C:459 , ARG K:165binding site for residue EDO C 302
06AC6SOFTWAREGLY D:153 , GLY D:214 , HOH D:518binding site for residue PO4 D 301
07AC7SOFTWAREHIS D:115 , ARG D:130 , GLU D:134 , ARG D:137 , ARG D:138 , LYS L:187binding site for residue R5P D 302
08AC8SOFTWAREHIS E:115 , ARG E:137 , ARG E:138 , HOH E:424 , HOH E:450 , HOH E:454 , LYS I:187binding site for residue R5P E 301
09AC9SOFTWARE3ZL F:81 , GLY F:153 , GLY F:214 , HOH F:453binding site for residue PO4 F 301
10AD1SOFTWAREARG F:137 , ARG F:138 , LYS K:187binding site for residue CAC F 302
11AD2SOFTWARELYS A:187 , HIS G:115 , ARG G:130 , GLU G:134 , ARG G:137 , ARG G:138 , EDO G:302 , HOH G:442binding site for residue R5P G 301
12AD3SOFTWAREILE G:84 , GLU G:105 , HIS G:115 , GLY G:128 , GLU G:134 , ARG G:138 , R5P G:301 , HOH G:464binding site for residue EDO G 302
13AD4SOFTWAREARG A:137 , GLY A:190 , VAL G:183 , ALA G:186 , LYS G:187 , HOH G:460 , HOH G:470binding site for residue EDO G 303
14AD5SOFTWAREGLY H:153 , GLY H:214 , GLY H:235 , HOH H:478binding site for residue PO4 H 301
15AD6SOFTWARELYS C:187 , HOH C:465 , ARG H:137 , ARG H:138binding site for residue CAC H 302
16AD7SOFTWARELYS E:187 , GLU I:105 , HIS I:115 , ARG I:130 , GLU I:134 , ARG I:137 , ARG I:138 , HOH I:473binding site for residue R5P I 301
17AD8SOFTWARELYS B:187 , GLU J:105 , HIS J:115 , ARG J:130 , GLU J:134 , ARG J:137 , ARG J:138binding site for residue R5P J 301
18AD9SOFTWARELYS F:187 , GLU K:105 , HIS K:115 , ARG K:130 , GLU K:134 , ARG K:137 , ARG K:138 , HOH K:453binding site for residue R5P K 301
19AE1SOFTWARELYS D:187 , ARG L:137 , ARG L:138 , HOH L:483binding site for residue CAC L 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WY0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WY0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WY0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WY0)

(-) Exons   (0, 0)

(no "Exon" information available for 4WY0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh....eeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 A  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    24        34        44  ||    63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263        
                                                           47|                      81-L5P                                                                                                                                                                                          
                                                            57                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eeeeee.hhhhhhhhhhhh..eeee...........hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 B   6 TDRVKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGLG 272
                                    15        25        35        45 ||     62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272
                                                                    47|                                                                                                                                                                                                                         
                                                                     55                                                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 C  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALEGGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKG 270
                                    24        34        44 ||     63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       
                                                          46|                       81-L5P                                                                                                                                                                                         
                                                           56                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 D  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKG 270
                                    24        34        44  ||    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       
                                                           47|                                                                                                                                                                                                                     
                                                            57                                                                                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 E  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALEGGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKG 270
                                    24        34        44 ||     63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       
                                                          46|                       81-L5P                                                                                                                                                                                         
                                                           56                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.hhhhhhhhhhhh..eeee..........hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh....eeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 F  16 MQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    25        35        45  ||    63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263        
                                                           48|                      81-3ZL                                                                                                                                                                                          
                                                            57                                                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....eeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh....eeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 G   6 TDRVKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    15        25        35        45 ||     64        74      | 84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       
                                                                    47|                      81-L5P                                                                                                                                                                                          
                                                                     57                                                                                                                                                                                                                      


Chain H from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhh..eeee........hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wy0 H  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALEGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKG 270
                                    24        34        44 ||     64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264      
                                                          46|                                                                                                                                                                                                                     
                                                           57                                                                                                                                                                                                                     


Chain I from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.hhhhhhhhhhhh..eeee..........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 I  16 MQKGGVIMDVVNAEQAKIAEAAGAVAVMALERGGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGLG 272
                                    25        35        45 ||     63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263         
                                                          47|                       81-L5P                                                                                                                                                                                           
                                                           56                                                                                                                                                                                                                        


Chain J from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.hhhhhhhhhhhh..eeee........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 J  17 QKGGVIMDVVNAEQAKIAEAAGAVAVMALEGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    26        36        46|       66        76    |   86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266     
                                                        46|                      81-L5P                                                                                                                                                                                          
                                                         57                                                                                                                                                                                                                      


Chain K from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhh..eeee.........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wy0 K  15 EMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    24        34        44  ||    63        73       |83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263        
                                                           47|                      81-L5P                                                                                                                                                                                          
                                                            57                                                                                                                                                                                                                      


Chain L from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.hhhhhhhhhhhh..eeee........hhhhhhhhhhhh...eee.....hhhhhhhhhhhh..eeee.............hhhhh...eeeee.hhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wy0 L  16 MQKGGVIMDVVNAEQAKIAEAAGAVAVMALEGVARMADPTVIEEVMNAVSIPVMAkVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    25        35        45||      65        75     |  85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265      
                                                         46|                      81-L5P                                                                                                                                                                                          
                                                          57
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WY0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WY0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WY0)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    3ZL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CAC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    L5P  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    R5P  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4wy0)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4wy0
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PDXS_GEOKA | Q5L3Y2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.-.-.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  PDXS_GEOKA | Q5L3Y2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDXS_GEOKA | Q5L3Y2: 1znn 4wxy 4wxz

(-) Related Entries Specified in the PDB File

4wxy 4wxz