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(-) Description

Title :  STRUCTURE OF THE SYNTHASE SUBUNIT OF PLP SYNTHASE
 
Authors :  J. Zhu, J. W. Burgner, E. Harms, B. R. Belitsky, J. L. Smith
Date :  11 May 05  (Deposition) - 24 May 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (2x)
Keywords :  Tim Barrel, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhu, J. W. Burgner, E. Harms, B. R. Belitsky, J. L. Smith
A New Arrangement Of (Beta/Alpha)8 Barrels In The Synthase Subunit Of Plp Synthase.
J. Biol. Chem. V. 280 27914 2005
PubMed-ID: 15911615  |  Reference-DOI: 10.1074/JBC.M503642200

(-) Compounds

Molecule 1 - PLP SYNTHASE
    Chains: A, B, C, D, E, F
    Fragment: SYNTHASE SUBUNIT
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (2x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1MRD6Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
2SO412Ligand/IonSULFATE ION
Biological Unit 1 (2, 36)
No.NameCountTypeFull Name
1MRD12Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
2SO424Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:115 , ARG A:137 , ARG A:138 , HOH A:3097 , LYS C:187BINDING SITE FOR RESIDUE SO4 A 2401
02AC2SOFTWAREPRO A:152 , GLY A:153 , THR A:154 , GLY A:155 , GLY A:214 , MRD A:2888 , HOH A:2934 , HOH A:2940 , HOH A:2950 , HOH A:2968 , HOH A:3213BINDING SITE FOR RESIDUE SO4 A 2402
03AC3SOFTWAREGLU B:134 , ARG B:137 , ARG B:138 , LYS B:187 , HOH B:2993 , HOH B:3002 , HOH B:3149 , HOH B:3186BINDING SITE FOR RESIDUE SO4 B 2403
04AC4SOFTWAREPRO B:152 , GLY B:153 , THR B:154 , GLY B:155 , GLY B:214 , HOH B:2933 , HOH B:2966 , HOH B:2974 , HOH B:2980 , HOH B:3219 , HOH B:3235BINDING SITE FOR RESIDUE SO4 B 2404
05AC5SOFTWARELYS A:187 , HIS C:115 , GLU C:134 , ARG C:137 , ARG C:138 , HOH C:2933BINDING SITE FOR RESIDUE SO4 C 2405
06AC6SOFTWAREPRO C:152 , GLY C:153 , THR C:154 , GLY C:155 , GLY C:213 , GLY C:214 , MRD C:2890 , HOH C:2939 , HOH C:3005 , HOH C:3078 , HOH C:3133BINDING SITE FOR RESIDUE SO4 C 2406
07AC7SOFTWAREHIS D:115 , GLU D:134 , ARG D:137 , ARG D:138 , HOH D:3012 , HOH D:3020 , LYS F:187BINDING SITE FOR RESIDUE SO4 D 2407
08AC8SOFTWAREPRO D:152 , GLY D:153 , THR D:154 , GLY D:155 , GLY D:213 , GLY D:214 , HOH D:2951 , HOH D:2957 , HOH D:3021 , HOH D:3031BINDING SITE FOR RESIDUE SO4 D 2408
09AC9SOFTWAREHIS E:115 , ARG E:137 , ARG E:138 , LYS E:187 , HOH E:2995 , HOH E:3025BINDING SITE FOR RESIDUE SO4 E 2409
10BC1SOFTWAREGLY E:153 , THR E:154 , GLY E:155 , GLY E:213 , GLY E:214 , HOH E:2913 , HOH E:2924 , HOH E:2970 , HOH E:3000BINDING SITE FOR RESIDUE SO4 E 2410
11BC2SOFTWARELYS D:187 , GLU F:134 , ARG F:137 , ARG F:138 , HOH F:3016 , HOH F:3044BINDING SITE FOR RESIDUE SO4 F 2411
12BC3SOFTWAREPRO F:152 , GLY F:153 , THR F:154 , GLY F:155 , GLY F:213 , GLY F:214 , MRD F:2893 , HOH F:2966 , HOH F:2975 , HOH F:3036BINDING SITE FOR RESIDUE SO4 F 2412
13BC4SOFTWAREASP A:24 , LYS A:81 , ASP A:102 , GLY A:213 , PHE A:233 , VAL A:234 , GLY A:235 , SO4 A:2402 , HOH A:2934 , HOH A:2963BINDING SITE FOR RESIDUE MRD A 2888
14BC5SOFTWAREASP B:24 , LYS B:81 , ASP B:102 , GLY B:213 , PHE B:233 , VAL B:234 , GLY B:235 , HOH B:2952 , HOH B:2974BINDING SITE FOR RESIDUE MRD B 2889
15BC6SOFTWAREASP C:24 , LYS C:81 , ASP C:102 , GLY C:213 , PHE C:233 , VAL C:234 , SO4 C:2406 , HOH C:3005 , HOH C:3009 , HOH C:3133BINDING SITE FOR RESIDUE MRD C 2890
16BC7SOFTWAREASP D:24 , LYS D:81 , ASP D:102 , GLY D:213 , PHE D:233 , VAL D:234 , GLY D:235 , HOH D:2951BINDING SITE FOR RESIDUE MRD D 2891
17BC8SOFTWAREASP E:24 , LYS E:81 , ASP E:102 , GLY E:213 , PHE E:233 , VAL E:234 , GLY E:235 , HOH E:2932BINDING SITE FOR RESIDUE MRD E 2892
18BC9SOFTWAREASP F:24 , LYS F:81 , ASP F:102 , GLY F:213 , PHE F:233 , VAL F:234 , GLY F:235 , SO4 F:2412 , HOH F:2962BINDING SITE FOR RESIDUE MRD F 2893

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZNN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZNN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1ZNN)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDXS_SNZ_1PS01235 PdxS/SNZ family signature.PDXS_GEOKA205-223
 
 
 
 
 		  6A:205-223
B:205-223
C:205-223
D:205-223
E:205-223
F:205-223
Biological Unit 1 (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDXS_SNZ_1PS01235 PdxS/SNZ family signature.PDXS_GEOKA205-223
 
 
 
 
 		  12A:205-223
B:205-223
C:205-223
D:205-223
E:205-223
F:205-223

(-) Exons   (0, 0)

(no "Exon" information available for 1ZNN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znna1 A:18-271 Pyridoxal bi         osynthesis lyase PdxS                                                                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhh..eeee..---------.......hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn A  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znnb_ B: Pyridoxal biosynth         esis lyase PdxS                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhh..eeee..---------.......hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee.hhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn B  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56                                                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znnc_ C: Pyridoxal biosynth         esis lyase PdxS                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhh..eeee..---------.......hhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....eeee....hhhhhhhhhhh...eeee.hhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn C  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znnd_ D: Pyridoxal biosynth         esis lyase PdxS                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhh...eeee..---------.......hhhhhhhhhh.....eeeeee..hhhhhhhhhhhh..eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eee......hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn D  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56                                                                                                                                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znne_ E: Pyridoxal biosynth         esis lyase PdxS                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhh..eeee..---------.......hhhhhhhhhh.....eeeeee..hhhhhhhhhhh...eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....eeee.....hhhhhhhhhhh...eeeehhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn E  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56                                                                                                                                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:245
 aligned with PDXS_GEOKA | Q5L3Y2 from UniProtKB/Swiss-Prot  Length:294

    Alignment length:254
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
           PDXS_GEOKA    18 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVATPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
               SCOP domains d1znnf_ F: Pyridoxal biosynth         esis lyase PdxS                                                                                                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) SOR_SNZ-1znnF01 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) SOR_SNZ-1znnF02 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) SOR_SNZ-1znnF03 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) SOR_SNZ-1znnF04 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) SOR_SNZ-1znnF05 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) SOR_SNZ-1znnF06 F:18-212                                                                                                                                                                           ----------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ..eeeeee.hhhhhhhhhhh...eeee..---------.......hhhhhhhhhhhh...eeeeee..hhhhhhhhhhh...eeeee............hhhhh...eeeee.hhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.....eeee....hhhhhhhhhhh...eeee.hhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PDXS_SNZ_1         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1znn F  18 KGGVIMDVVNAEQAKIAEAAGAVAVMALE---------GGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL 271
                                    27        37        |-        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267    
                                                       46        56
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1ZNN)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PDXS_GEOKA | Q5L3Y2)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0036381    pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity    Catalysis of the reaction: D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + L-glutamine = pyridoxal 5'-phosphate + L-glutamate + 3 H2O + phosphate. The reaction occurs in two steps: L-glutamine + H2O = L-glutamate + NH3, and subsequently D-ribose 5-phosphate + D-glyceraldehyde 3-phosphate + NH3 = pyridoxal 5'-phosphate + 4 H2O + phosphate.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0042823    pyridoxal phosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6.
    GO:0042819    vitamin B6 biosynthetic process    The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate.

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  1znn
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 Related Entries

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        PDXS_GEOKA | Q5L3Y2: 4wxy 4wxz 4wy0

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