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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DNA BINDING DOMAINS OF WILD TYPE LIAR FROM E. FAECALIS
 
Authors :  M. Davlieva, Y. Shamoo
Date :  29 Oct 14  (Deposition) - 06 May 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helix-Turn-Helix, Response Regulator, Enterococci, Dna Binding Domain, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Davlieva, Y. Shi, P. G. Leonard, T. A. Johnson, M. R. Zianni, C. A. Arias, J. E. Ladbury, Y. Shamoo
A Variable Dna Recognition Site Organization Establishes Th Liar-Mediated Cell Envelope Stress Response Of Enterococci To Daptomycin.
Nucleic Acids Res. V. 43 4758 2015
PubMed-ID: 25897118  |  Reference-DOI: 10.1093/NAR/GKV321

(-) Compounds

Molecule 1 - RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: DNA BINDING DOMAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GOL1Ligand/IonGLYCEROL
3PR2Ligand/IonPRASEODYMIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:190 , HOH A:416 , HOH A:420 , ASP B:188 , ACT B:301 , HOH B:420binding site for residue PR A 300
2AC2SOFTWAREASP A:188 , ASP A:190 , HOH A:411 , ACT B:301binding site for residue GOL A 301
3AC3SOFTWAREASP A:188 , ASP B:190 , ACT B:301 , HOH B:409 , HOH B:414binding site for residue PR B 300
4AC4SOFTWAREASP A:188 , PR A:300 , GOL A:301 , HOH A:420 , ASP B:188 , ASP B:190 , PR B:300 , HOH B:409binding site for residue ACT B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WSZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WSZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WSZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WSZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4WSZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4wsz A 140 VLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGLA 205
                                   149       159       169       179       189       199      


Chain B from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4wsz B 140 VLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGLA 205
                                   149       159       169       179       189       199
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WSZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WSZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WSZ)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wsz
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D4EMQ0_ENTFL | D4EMQ0: 4wt0 4wu4 4wuh 4wul

(-) Related Entries Specified in the PDB File

4wt0 4wu4 4wuh 4wul