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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DNA BINDING DOMAINS OF LIARD191N FROM E. FAECALIS
 
Authors :  M. Davlieva, Y. Shamoo
Date :  29 Oct 14  (Deposition) - 06 May 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Helix-Turn-Helix, Response Regulator, Daptomycin Resistant Mutation, Dna Binding Domain, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Davlieva, Y. Shi, P. G. Leonard, T. A. Johnson, M. R. Zianni, C. A. Arias, J. E. Ladbury, Y. Shamoo
A Variable Dna Recognition Site Organization Establishes Th Liar-Mediated Cell Envelope Stress Response Of Enterococci To Daptomycin.
Nucleic Acids Res. V. 43 4758 2015
PubMed-ID: 25897118  |  Reference-DOI: 10.1093/NAR/GKV321

(-) Compounds

Molecule 1 - RESPONSE REGULATOR RECEIVER DOMAIN PROTEIN
    Chains: B, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: DNA BINDING DOMAIN
    Mutation: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PR2Ligand/IonPRASEODYMIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:188 , HOH A:412 , ASP B:190binding site for residue PR B 300
2AC2SOFTWAREASP A:190 , HOH A:408 , HOH A:409 , ASP B:188 , HOH B:418binding site for residue PR A 300

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WT0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WT0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WT0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WT0)

(-) Exons   (0, 0)

(no "Exon" information available for 4WT0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4wt0 A 140 VLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDNRTQAAIYAFQHGLA 205
                                   149       159       169       179       189       199      


Chain B from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4wt0 B 140 VLHEDLTNREHEILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDNRTQAAIYAFQHGLA 205
                                   149       159       169       179       189       199
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WT0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WT0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WT0)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D4EMQ0_ENTFL | D4EMQ0: 4wsz 4wu4 4wuh 4wul

(-) Related Entries Specified in the PDB File

4wsz 4wu4 4wuh 4wul