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(-) Description

Title :  CHAETOMIUM THEROMOPHILUM TREX2 CID DOMAIN COMPLEX
 
Authors :  E. Valkov, M. Stewart
Date :  21 Oct 14  (Deposition) - 17 Jun 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.31
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Cell Cycle, Mrna Nuclear Export (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Dimitrova, E. Valkov, S. Aibara, D. Flemming, S. H. Mclaughlin, E. Hurt, M. Stewart
Structural Characterization Of The Chaetomium Thermophilum Trex-2 Complex And Its Interaction With The Mrna Nuclear Export Factor Mex67:Mtr2.
Structure V. 23 1246 2015
PubMed-ID: 26051714  |  Reference-DOI: 10.1016/J.STR.2015.05.002

(-) Compounds

Molecule 1 - CELL DIVISION CONTROL PROTEIN 31-LIKE PROTEIN
    Chains: A, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
    Synonym: CDC31
 
Molecule 2 - PUTATIVE SAC3 FAMILY PROTEIN
    Chains: B, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1085-1170
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
 
Molecule 3 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: C, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WPX)

(-) Sites  (0, 0)

(no "Site" information available for 4WPX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WPX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WPX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WPX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WPX)

(-) Exons   (0, 0)

(no "Exon" information available for 4WPX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4wpx A    6 QIQYTIPPREDYNKLSDEQKTRISEAFELFDSNKDGLLSYEEFRFVLRALGFDLPKQQTYDMLVRHGQRPANWPHDQECPPVYRQFNLATAQALAGTLIRQRDPRDELRRAFRLFDVDGKGMITEDDLRKVCQQVGNNIPDADIQAMIEEFDSNGKGGVDEDEFLRLMMSK  176
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175 


Chain B from PDB  Type:PROTEIN  Length:81
                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                4wpx B 1090 LMADFTKWFVTGDGGIMEEFTEETLRHLLWDVWQRHQREEAERKRKAEEEESWRLAREHLTHRLQVKYFYRWREKARALAT 1170
                                  1099      1109      1119      1129      1139      1149      1159      1169 


Chain C from PDB  Type:PROTEIN  Length:108
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                4wpx C   13 PAAAANYTPATLDQDLRSQINSLLIKEGHVAKIQEHLLHHLHAHPSNWPTVVQNHALSLLRSGEVTSFPALLRRVVEDVRQDTAPSLAVPQSVVEEALKVTRECLDQL  159
                                    22        32        42        52        62        72        82        92   ||  141       151        
                                                                                                              96|                       
                                                                                                              136                       


Chain D from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                             
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh.hhhhhhhhhhhhhhhh.....eehhhhhhhhhhhh....hhhhhhhhhhhhh............hhhhh.eehhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....eehhhhhhhhhhhhh...hhhhhhhhhhh........eehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4wpx D    5 RQIQYTIPPREDYNKLSDEQKTRISEAFELFDSNKDGLLSYEEFRFVLRALGFDLPKQQTYDMLVRHGQRPANWPHDQECPPVYRQFNLATAQALAGTLIRQRDPRDELRRAFRLFDVDGKGMITEDDLRKVCQQVGNNIPDADIQAMIEEFDSNGKGGVDEDEFLRLMMSK  176
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174  


Chain E from PDB  Type:PROTEIN  Length:81
                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                4wpx E 1090 LMADFTKWFVTGDGGIMEEFTEETLRHLLWDVWQRHQREEAERKRKAEEEESWRLAREHLTHRLQVKYFYRWREKARALAT 1170
                                  1099      1109      1119      1129      1139      1149      1159      1169 


Chain F from PDB  Type:PROTEIN  Length:117
                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                4wpx F   13 PAAAANYTPATLDQDLRSQINSLLIKEGHVAKIQEHLLHHLHAHPSNWPTVVQNHALSLLRSGEVTSFPALLRRVVEDVRQDTALAPPSLAVPQSVVEEALKVTRECLDQLCEIEEP  165
                                    22        32        42        52        62        72        82        92      |138       148       158       
                                                                                                                 99|                             
                                                                                                                 136
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WPX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WPX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WPX)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        G0SGL4_CHATD | G0SGL4: 4x2h 4x2o

(-) Related Entries Specified in the PDB File

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