Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  SELENOMETHIONINE DERIVATIVE OF XENOPUS LAEVIS EMBRYONIC EPIDERMAL LECTIN CARBOHYDRATE-BINDING DOMAIN
 
Authors :  K. Wangkanont, L. L. Kiessling, K. T. Forest
Date :  09 Oct 14  (Deposition) - 20 Jan 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  D,E,F  (1x)
Biol. Unit 2:  A,B,C  (1x)
Keywords :  Lectin, Carbohydrate-Binding Protein, Calcium, Trimer, Fibrinogen- Like Domain, X-Type Lectin, Innate Immunity, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Wangkanont, D. A. Wesener, J. A. Vidani, L. L. Kiessling, K. T. Fores
Structures Of Xenopus Embryonic Epidermal Lectin Reveal A Conserved Mechanism Of Microbial Glycan Recognition.
J. Biol. Chem. V. 291 5596 2016
PubMed-ID: 26755729  |  Reference-DOI: 10.1074/JBC.M115.709212

(-) Compounds

Molecule 1 - XEEL PROTEIN
    Chains: F, C, B, D, E, A
    Engineered: YES
    Expression System: TRICHOPULSIA NI
    Expression System Plasmid: PFASTBAC1
    Expression System Strain: HIGH FIVE
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: CARBOHYDRATE BINDING DOMAIN
    Gene: XEEL
    Organism Common: AFRICAN CLAWED FROG
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x):    DEF
Biological Unit 2 (1x): ABC   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 68)

Asymmetric Unit (3, 68)
No.NameCountTypeFull Name
11PE14Ligand/IonPENTAETHYLENE GLYCOL
2CA18Ligand/IonCALCIUM ION
3MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
11PE6Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 26)
No.NameCountTypeFull Name
11PE8Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN F:289 , GLU F:291 , GLU F:303 , HOH F:527 , HOH F:556 , HOH F:568 , HOH F:686binding site for residue CA F 401
02AC2SOFTWAREHIS F:115 , GLY F:126 , ASP F:162 , ASP F:311 , HOH F:619 , HOH F:687binding site for residue CA F 402
03AC3SOFTWAREGLU F:116 , ASN F:118 , GLY F:121 , ASP F:127 , HOH F:536 , HOH F:618binding site for residue CA F 403
04AC4SOFTWAREGLU F:141 , LYS F:222 , ASP F:224 , ILE F:225 , HOH F:574binding site for residue 1PE F 404
05AC5SOFTWARESER F:258 , PHE F:260 , THR F:261 , LYS F:286binding site for residue 1PE F 405
06AC6SOFTWAREASN C:289 , GLU C:291 , GLU C:303 , HOH C:557 , HOH C:565 , HOH C:650 , HOH C:653binding site for residue CA C 401
07AC7SOFTWAREGLU C:116 , ASN C:118 , GLY C:121 , ASP C:127 , HOH C:550 , HOH C:620binding site for residue CA C 402
08AC8SOFTWAREHIS C:115 , GLY C:126 , ASP C:162 , ASP C:311 , HOH C:558 , HOH C:723binding site for residue CA C 403
09AC9SOFTWAREGLU C:141 , LYS C:222 , ASP C:224 , ILE C:225binding site for residue 1PE C 404
10AD1SOFTWARESER C:258 , THR C:261 , LYS C:284 , LYS C:286binding site for residue 1PE C 405
11AD2SOFTWARELYS C:227 , CYS C:228binding site for residue 1PE C 406
12AD3SOFTWAREASN B:289 , GLU B:291 , GLU B:303 , HOH B:504 , HOH B:512 , HOH B:544 , HOH B:551binding site for residue CA B 401
13AD4SOFTWAREGLU B:116 , ASN B:118 , GLY B:121 , ASP B:127 , HOH B:538 , HOH B:732binding site for residue CA B 402
14AD5SOFTWAREHIS B:115 , GLY B:126 , ASP B:162 , ASP B:311 , HOH B:566 , HOH B:733binding site for residue CA B 403
15AD6SOFTWAREGLU B:141 , LYS B:222 , TYR B:223 , ASP B:224 , HOH B:647 , HOH B:721binding site for residue 1PE B 404
16AD7SOFTWARECYS B:228 , LYS B:286binding site for residue 1PE B 405
17AD8SOFTWAREASN D:289 , GLU D:291 , GLU D:303 , HOH D:593 , HOH D:680 , HOH D:710binding site for residue CA D 401
18AD9SOFTWAREHIS D:115 , GLY D:126 , ASP D:162 , ASP D:311 , HOH D:534 , HOH D:586binding site for residue CA D 402
19AE1SOFTWAREGLU D:116 , ASN D:118 , GLY D:121 , ASP D:127 , HOH D:554 , HOH D:560binding site for residue CA D 403
20AE2SOFTWAREGLU D:141 , LYS D:222 , ASP D:224 , ILE D:225binding site for residue 1PE D 404
21AE3SOFTWARESER D:258 , PHE D:260 , THR D:261 , LYS D:284 , LYS D:286 , HOH D:511binding site for residue 1PE D 405
22AE4SOFTWAREASN E:289 , GLU E:291 , GLU E:303 , HOH E:540 , HOH E:549 , HOH E:556 , HOH E:715binding site for residue CA E 401
23AE5SOFTWAREHIS E:115 , GLY E:126 , ASP E:162 , ASP E:311 , HOH E:526 , HOH E:736binding site for residue CA E 402
24AE6SOFTWAREGLU E:116 , ASN E:118 , GLY E:121 , ASP E:127 , HOH E:532 , HOH E:735binding site for residue CA E 403
25AE7SOFTWAREGLU E:141 , LYS E:222 , ILE E:225binding site for residue 1PE E 404
26AE8SOFTWARESER E:258 , PHE E:260 , THR E:261 , LYS E:284 , LYS E:286 , HOH E:504binding site for residue 1PE E 405
27AE9SOFTWAREASN A:289 , GLU A:291 , GLU A:303 , HOH A:550 , HOH A:566 , HOH A:577 , HOH A:735binding site for residue CA A 401
28AF1SOFTWAREHIS A:115 , GLY A:126 , ASP A:162 , ASP A:311 , HOH A:764 , HOH A:765binding site for residue CA A 402
29AF2SOFTWAREGLU A:116 , ASN A:118 , GLY A:121 , ASP A:127 , HOH A:549 , HOH A:733binding site for residue CA A 403
30AF3SOFTWAREGLU A:141 , LYS A:222 , ASP A:224 , ILE A:225 , HOH A:629binding site for residue 1PE A 404
31AF4SOFTWARESER A:258 , PHE A:260 , THR A:261 , LYS A:284 , LYS A:286binding site for residue 1PE A 405
32AF5SOFTWARECYS A:228 , LYS A:286binding site for residue 1PE A 406

(-) SS Bonds  (24, 24)

Asymmetric Unit
No.Residues
1A:70 -A:99
2A:123 -A:309
3A:228 -A:288
4A:280 -A:294
5B:70 -B:99
6B:123 -B:309
7B:228 -B:288
8B:280 -B:294
9C:70 -C:99
10C:123 -C:309
11C:228 -C:288
12C:280 -C:294
13D:70 -D:99
14D:123 -D:309
15D:228 -D:288
16D:280 -D:294
17E:70 -E:99
18E:123 -E:309
19E:228 -E:288
20E:280 -E:294
21F:70 -F:99
22F:123 -F:309
23F:228 -F:288
24F:280 -F:294

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ser F:305 -Pro F:306
2Ser C:305 -Pro C:306
3Ser B:305 -Pro B:306
4Ser D:305 -Pro D:306
5Ser E:305 -Pro E:306
6Ser A:305 -Pro A:306

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WMO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WMO)

(-) Exons   (0, 0)

(no "Exon" information available for 4WMO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee...hhhhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhh..hhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo A  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee...hhhhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhh..hhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo B  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee...hhhhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhhhhhhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo C  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee.....hhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhhhhhhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo D  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE                                                                                                                                                     


Chain E from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee...hhhhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhh.hhhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo E  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE                                                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.....eeeeee.....eeeeeee.hhhhh.eeeeeee.............................hhhhh.....hhhhh....ee.hhhhhh...eeeeeeee...hhhhhhhhh.eeee...hhhhhhh.hhhhhhhhh...............eee.eeee.hhhhhhhhhhhhhhh.eeeeeeeeeee.....eeeeeeeeee...hhhhh.eee...............................hhhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wmo F  66 GYRSCNEIKSSDSRAPDGIYTLATEDGESYQTFCDmTTNGGGWTLVASVHENNmFGKCTVGDRWSTQQGNmLQNPEGDGNWANYATFGLPEGATSDDYKNPGYYDIEAKNLALWHVPNKTPmVmWRNSSILRYRTQNGFLTEEGGNLFELYKKYPVKYDIGKCLADNGPAVPVVYDLGSAEKTASLYSPNGRSEFTPGFVQFRAVNSERATLALCAGVKVKGCNVEHHCIGGGGYIPEGSPRQCGDFAALDWDGYGTNLGWSASKQIIEAAVmLFYR 342
                                    75        85        95     | 105       115   |   125       135|      145       155       165       175       185 | |   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335  |    
                                                             101-MSE           119-MSE          136-MSE                                            187-MSE                                                                                                                                                338-MSE
                                                                                                                                                     189-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WMO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WMO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WMO)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4WMO)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1PE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser A:305 - Pro A:306   [ RasMol ]  
    Ser B:305 - Pro B:306   [ RasMol ]  
    Ser C:305 - Pro C:306   [ RasMol ]  
    Ser D:305 - Pro D:306   [ RasMol ]  
    Ser E:305 - Pro E:306   [ RasMol ]  
    Ser F:305 - Pro F:306   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4wmo
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  ITLN1_XENLA | Q5PPM0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  ITLN1_XENLA | Q5PPM0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITLN1_XENLA | Q5PPM0: 4wn0

(-) Related Entries Specified in the PDB File

4wn0