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Asym. Unit
Info
Asym.Unit (310 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (152 KB)
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(1)
Title
:
SELENOMETHIONINE DERIVATIVE OF XENOPUS LAEVIS EMBRYONIC EPIDERMAL LECTIN CARBOHYDRATE-BINDING DOMAIN
Authors
:
K. Wangkanont, L. L. Kiessling, K. T. Forest
Date
:
09 Oct 14 (Deposition) - 20 Jan 16 (Release) - 23 Mar 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Keywords
:
Lectin, Carbohydrate-Binding Protein, Calcium, Trimer, Fibrinogen- Like Domain, X-Type Lectin, Innate Immunity, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Wangkanont, D. A. Wesener, J. A. Vidani, L. L. Kiessling, K. T. Fores
Structures Of Xenopus Embryonic Epidermal Lectin Reveal A Conserved Mechanism Of Microbial Glycan Recognition.
J. Biol. Chem. V. 291 5596 2016
[
close entry info
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Hetero Components
(3, 68)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
1j: PENTAETHYLENE GLYCOL (1PEj)
1k: PENTAETHYLENE GLYCOL (1PEk)
1l: PENTAETHYLENE GLYCOL (1PEl)
1m: PENTAETHYLENE GLYCOL (1PEm)
1n: PENTAETHYLENE GLYCOL (1PEn)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
2o: CALCIUM ION (CAo)
2p: CALCIUM ION (CAp)
2q: CALCIUM ION (CAq)
2r: CALCIUM ION (CAr)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
14
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
18
Ligand/Ion
CALCIUM ION
3
MSE
36
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN F:289 , GLU F:291 , GLU F:303 , HOH F:527 , HOH F:556 , HOH F:568 , HOH F:686
binding site for residue CA F 401
02
AC2
SOFTWARE
HIS F:115 , GLY F:126 , ASP F:162 , ASP F:311 , HOH F:619 , HOH F:687
binding site for residue CA F 402
03
AC3
SOFTWARE
GLU F:116 , ASN F:118 , GLY F:121 , ASP F:127 , HOH F:536 , HOH F:618
binding site for residue CA F 403
04
AC4
SOFTWARE
GLU F:141 , LYS F:222 , ASP F:224 , ILE F:225 , HOH F:574
binding site for residue 1PE F 404
05
AC5
SOFTWARE
SER F:258 , PHE F:260 , THR F:261 , LYS F:286
binding site for residue 1PE F 405
06
AC6
SOFTWARE
ASN C:289 , GLU C:291 , GLU C:303 , HOH C:557 , HOH C:565 , HOH C:650 , HOH C:653
binding site for residue CA C 401
07
AC7
SOFTWARE
GLU C:116 , ASN C:118 , GLY C:121 , ASP C:127 , HOH C:550 , HOH C:620
binding site for residue CA C 402
08
AC8
SOFTWARE
HIS C:115 , GLY C:126 , ASP C:162 , ASP C:311 , HOH C:558 , HOH C:723
binding site for residue CA C 403
09
AC9
SOFTWARE
GLU C:141 , LYS C:222 , ASP C:224 , ILE C:225
binding site for residue 1PE C 404
10
AD1
SOFTWARE
SER C:258 , THR C:261 , LYS C:284 , LYS C:286
binding site for residue 1PE C 405
11
AD2
SOFTWARE
LYS C:227 , CYS C:228
binding site for residue 1PE C 406
12
AD3
SOFTWARE
ASN B:289 , GLU B:291 , GLU B:303 , HOH B:504 , HOH B:512 , HOH B:544 , HOH B:551
binding site for residue CA B 401
13
AD4
SOFTWARE
GLU B:116 , ASN B:118 , GLY B:121 , ASP B:127 , HOH B:538 , HOH B:732
binding site for residue CA B 402
14
AD5
SOFTWARE
HIS B:115 , GLY B:126 , ASP B:162 , ASP B:311 , HOH B:566 , HOH B:733
binding site for residue CA B 403
15
AD6
SOFTWARE
GLU B:141 , LYS B:222 , TYR B:223 , ASP B:224 , HOH B:647 , HOH B:721
binding site for residue 1PE B 404
16
AD7
SOFTWARE
CYS B:228 , LYS B:286
binding site for residue 1PE B 405
17
AD8
SOFTWARE
ASN D:289 , GLU D:291 , GLU D:303 , HOH D:593 , HOH D:680 , HOH D:710
binding site for residue CA D 401
18
AD9
SOFTWARE
HIS D:115 , GLY D:126 , ASP D:162 , ASP D:311 , HOH D:534 , HOH D:586
binding site for residue CA D 402
19
AE1
SOFTWARE
GLU D:116 , ASN D:118 , GLY D:121 , ASP D:127 , HOH D:554 , HOH D:560
binding site for residue CA D 403
20
AE2
SOFTWARE
GLU D:141 , LYS D:222 , ASP D:224 , ILE D:225
binding site for residue 1PE D 404
21
AE3
SOFTWARE
SER D:258 , PHE D:260 , THR D:261 , LYS D:284 , LYS D:286 , HOH D:511
binding site for residue 1PE D 405
22
AE4
SOFTWARE
ASN E:289 , GLU E:291 , GLU E:303 , HOH E:540 , HOH E:549 , HOH E:556 , HOH E:715
binding site for residue CA E 401
23
AE5
SOFTWARE
HIS E:115 , GLY E:126 , ASP E:162 , ASP E:311 , HOH E:526 , HOH E:736
binding site for residue CA E 402
24
AE6
SOFTWARE
GLU E:116 , ASN E:118 , GLY E:121 , ASP E:127 , HOH E:532 , HOH E:735
binding site for residue CA E 403
25
AE7
SOFTWARE
GLU E:141 , LYS E:222 , ILE E:225
binding site for residue 1PE E 404
26
AE8
SOFTWARE
SER E:258 , PHE E:260 , THR E:261 , LYS E:284 , LYS E:286 , HOH E:504
binding site for residue 1PE E 405
27
AE9
SOFTWARE
ASN A:289 , GLU A:291 , GLU A:303 , HOH A:550 , HOH A:566 , HOH A:577 , HOH A:735
binding site for residue CA A 401
28
AF1
SOFTWARE
HIS A:115 , GLY A:126 , ASP A:162 , ASP A:311 , HOH A:764 , HOH A:765
binding site for residue CA A 402
29
AF2
SOFTWARE
GLU A:116 , ASN A:118 , GLY A:121 , ASP A:127 , HOH A:549 , HOH A:733
binding site for residue CA A 403
30
AF3
SOFTWARE
GLU A:141 , LYS A:222 , ASP A:224 , ILE A:225 , HOH A:629
binding site for residue 1PE A 404
31
AF4
SOFTWARE
SER A:258 , PHE A:260 , THR A:261 , LYS A:284 , LYS A:286
binding site for residue 1PE A 405
32
AF5
SOFTWARE
CYS A:228 , LYS A:286
binding site for residue 1PE A 406
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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SCOP Domains
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CATH Domains
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Pfam Domains
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