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(-) Description

Title :  COMPLEX OF AUTONOMOUS SCAG COHESIN COHG AND X-DOC DOMAINS
 
Authors :  M. Voronov-Goldman, R. Lamed, E. A. Bayer, O. Yaniv, L. J. W. Shimon
Date :  05 Oct 14  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nine-Stranded Beta Sandwich, Cohesin, X-Dockerin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Voronov-Goldman, R. Lamed, E. A. Bayer, O. Yaniv, L. J. W. Shimon
Complex Of Autonomous Scag Cohesin Cohg And X-Doc Domains
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE CELLULOSE-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 565-803
    Gene: CTTA
    Organism Scientific: RUMINOCOCCUS FLAVEFACIENS
    Organism Taxid: 641112
    Strain: FD-1
 
Molecule 2 - AUTONOMOUS COHESIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: RUMINOCOCCUS FLAVEFACIENS
    Organism Taxid: 641112
    Strain: FD-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA2Ligand/IonCALCIUM ION
3NO31Ligand/IonNITRATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:177 , LYS A:179 , ASP A:181 , LEU A:196 , ASP A:201 , HOH A:502binding site for residue CA A 301
2AC2SOFTWARESER A:166 , VAL A:167binding site for residue ACT A 302
3AC3SOFTWAREASP A:120 , ASP A:122 , ASN A:124 , ILE A:126 , ASP A:131 , HOH A:468binding site for residue CA A 303
4AC4SOFTWARETHR B:42 , THR B:43binding site for residue ACT B 201
5AC5SOFTWARETHR A:210 , ASP B:18 , GLU B:19 , SER B:130 , GLY B:131 , GLU B:171 , HOH B:314binding site for residue NO3 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WKZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:5 -Ser A:6

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WKZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WKZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4WKZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeeee..eeee......hhh.eeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhh.....hhhhhh.......eeeee................eeeeeee...........hhhhhhhhhhhhhhhh....hhhhh.............hhhhhhhhhhhh.............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkz A   4 VTSAVKTQYVEIESVMGFYFNTEDKFDTAQIKKAVLHTVYNEGYTDDGVAVVLREYESEPVDITAELTFGDATPANTYKAVENKFDYEIPVYYNNATLKDAEGNDATVTVYIGLKGDTDLNNIVDGRDATATLTYYAATSTDGKDATTVALSPSTLVGGNPESVYDDFSAFLSDVKVDAGKELTRFAKKAERLIDGRDASSILTFYTKSSVDQYKDMAANEPNKLWDIVTA 234
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233 


Chain B from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eee....ee..ee.hhhh...eeeeee.....hhhhhhh.eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wkz B  11 NNAVINVDEMNEAFKDVPDLEGEGAHITLSNTTAKPGEMAEVTMSVSNADMQWNMCGIHIIYPDILKPEMKDPEERTVAFQKGDALEAATGIVCMEWQEGLPPVLTENKKGCLFLTAMFSGNQGGEGDMATFRFKVPDNAEPGAVYNLGYYYMNTDLFINEQNIPTYQKYAFTHMEGGTITVEL 194
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WKZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WKZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WKZ)

(-) Gene Ontology  (2, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0AEF5_RUMFL | A0AEF5: 4iu2 4iu3
        W5IDC3_RUMFL | W5IDC3: 4n2o

(-) Related Entries Specified in the PDB File

4n2o RFCOHG DOMAIN ALONE