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(-) Description

Title :  STRUCTURE OF A NOVEL AUTONOMOUS COHESIN PROTEIN FROM RUMINOCOCCUS FLAVEFACIENS
 
Authors :  F. Frolow, M. Voronov-Goldman, M. Levy-Assaraf, R. Lamed, E. Bayer, L.
Date :  05 Oct 13  (Deposition) - 18 Dec 13  (Release) - 14 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  A,B  (1x)
Biol. Unit 10:  C,D  (1x)
Biol. Unit 11:  E,F  (1x)
Biol. Unit 12:  G,H  (1x)
Keywords :  Nine-Stranded Beta Sandwich, Cohesin, Dockerin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Voronov-Goldman, M. Levy-Assaraf, O. Yaniv, G. Wisserman, S. Jindou, I. Borovok, E. A. Bayer, R. Lamed, L. J. Shimon, F. Frolow
Structural Characterization Of A Novel Autonomous Cohesin From Ruminococcus Flavefaciens.
Acta Crystallogr F Struct V. 70 450 2014 Biol Commun
PubMed-ID: 24699736  |  Reference-DOI: 10.1107/S2053230X14004051

(-) Compounds

Molecule 1 - AUTONOMOUS COHESIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RFCOHG MODULE RESIDUE NUMBERS 26-218
    Organism Scientific: RUMINOCOCCUS FLAVEFACIENS
    Organism Taxid: 1265
    Strain: FD-1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H
Biological Unit 9 (1x): AB      
Biological Unit 10 (1x):   CD    
Biological Unit 11 (1x):     EF  
Biological Unit 12 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 92)

Asymmetric Unit (2, 92)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2MSE88Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (1, 11)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE11Mod. Amino AcidSELENOMETHIONINE
Biological Unit 9 (1, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 10 (1, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 11 (1, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE22Mod. Amino AcidSELENOMETHIONINE
Biological Unit 12 (1, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE22Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:72 , LYS A:120 , ASN A:157 , HOH A:446BINDING SITE FOR RESIDUE CL A 301
2AC2SOFTWAREPHE B:24BINDING SITE FOR RESIDUE CL B 301
3AC3SOFTWARETHR H:141 , HOH H:430 , HOH H:436 , HOH H:446BINDING SITE FOR RESIDUE CL H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N2O)

(-) Cis Peptide Bonds  (18, 18)

Asymmetric Unit
No.Residues
1Glu A:31 -Gly A:32
2Glu A:33 -Gly A:34
3Glu B:31 -Gly B:32
4Glu B:33 -Gly B:34
5Ala C:8 -Asp C:9
6Glu C:31 -Gly C:32
7Glu C:33 -Gly C:34
8Glu D:31 -Gly D:32
9Glu D:33 -Gly D:34
10Glu E:31 -Gly E:32
11Glu E:33 -Gly E:34
12Glu F:31 -Gly F:32
13Glu F:33 -Gly F:34
14Asp G:9 -Leu G:10
15Glu G:31 -Gly G:32
16Glu G:33 -Gly G:34
17Glu H:31 -Gly H:32
18Glu H:33 -Gly H:34

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N2O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N2O)

(-) Exons   (0, 0)

(no "Exon" information available for 4N2O)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o A   2 GSSSVTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEH 196
                                    11        21        31        41       |51  |     61   |    71        81        91       101   |   111       121      |131       141       151       161 |     171       181   |   191     
                                             20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE       
                                                                               54-MSE     65-MSE                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o B   4 SSVTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEH 196
                                    13      | 23        33        43     |  53|      |63 |      73      | 83        93       103 |     113       123    |  133     | 143       153       163       173       183 |     193   
                                           20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE       
                                                                             54-MSE     65-MSE                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o C   8 ADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEHH 197
                                    17  |     27        37        47 |    | 57   |   |67        77  |     87        97       107       117       127|      137 |     147       157     | 167       177       187       197
                                       20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE        
                                                                         54-MSE     65-MSE                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o D   4 SSVTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVEL 194
                                    13      | 23        33        43     |  53|      |63 |      73      | 83        93       103 |     113       123    |  133     | 143       153       163       173       183 |     193 
                                           20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE     
                                                                             54-MSE     65-MSE                                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o E   6 VTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELE 195
                                    15    |   25        35        45   |    55     |  65        75    |   85        95       105       115       125  |    135   |   145       155       165       175       185       195
                                         20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE      
                                                                           54-MSE     65-MSE                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o F   7 TADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEHHHH 199
                                    16   |    26        36        46  |    |56    |   66        76   |    86        96       106       116       126 |     136  |    146       156      |166       176       186       196   
                                        20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE          
                                                                          54-MSE     65-MSE                                                                                                                                  


Chain G from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n2o G   5 SVTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEH 196
                                    14     |  24        34        44    |   54      | 64|       74     |  84        94       104|      114       124   |   134    |  144       154       164       174       184|      194  
                                          20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE       
                                                                            54-MSE     65-MSE                                                                                                                               


Chain H from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhh...........eeee.eeee....eeeeeeeee.......eeeeeeeee...ee.eeehhhhee..ee.hhhh...eeeeeee....hhhhhh..eeeeeeeee........eeeeeeeee.........eeeeeee.....eee....hhhhhhhhhhh...eeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2o H   6 VTADLNNAVINVDEmNEAFKDVPDLEGEGAHITLSNTTAKPGEmAEVTmSVSNADmQWNmCGIHIIYPDILKPEmKDPEERTVAFQKGDALEAATGIVCmEWQEGLPPVLTENKKGCLFLTAmFSGNQGGEGDmATFRFKVPDNAEPGAVYNLGYYYmNTDLFINEQNIPTYQKYAFTHmEGGTITVELEH 196
                                    15    |   25        35        45   |    55     |  65        75    |   85        95       105       115       125  |    135   |   145       155       165       175       185       195 
                                         20-MSE                       49-MSE|     61-MSE             80-MSE                  105-MSE                128-MSE    139-MSE                 163-MSE               185-MSE       
                                                                           54-MSE     65-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N2O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N2O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N2O)

(-) Gene Ontology  (1, 1)

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 Related Entries

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        W5IDC3_RUMFL | W5IDC3: 4wkz

(-) Related Entries Specified in the PDB File

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