Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  DONOR STRAND COMPLEMENTED FAEG OF F4AB FIMBRIAE
 
Authors :  K. Moonens, I. Van Den Broeck, M. De Kerpel, F. Deboeck, H. Raymaeker H. Remaut, H. De Greve
Date :  09 Sep 14  (Deposition) - 04 Feb 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Adhesin, Lectin, Immunoglobulin-Like Fold, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Moonens, I. Van Den Broeck, M. De Kerpel, F. Deboeck, H. Raymaekers, H. Remaut, H. De Greve
Structural And Functional Insight Into The Carbohydrate Receptor Binding Of F4 Fimbriae-Producing Enterotoxigenic Escherichia Coli.
J. Biol. Chem. V. 290 8409 2015
PubMed-ID: 25631050  |  Reference-DOI: 10.1074/JBC.M114.618595

(-) Compounds

Molecule 1 - K88 FIMBRIAL PROTEIN AB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PDEST14
    Expression System Strain: C43
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 40-285
    Gene: FAEG
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: K88 ANTIGEN,K88 PILIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WE2)

(-) Sites  (0, 0)

(no "Site" information available for 4WE2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WE2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WE2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WE2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WE2)

(-) Exons   (0, 0)

(no "Exon" information available for 4WE2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......eeee.hhh.....eeeee....eeeeeeee...........eeeeee.....ee..ee........eeeeeeeee.....eeeeeeeeeeeeeeeeee.....eeeeee........................hhhhhhhhhhhhh..hhhhhhhhhhhhh....eeee...............eeeeeeeeee....eeeeee.......eeee..eeeeeee.........eeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4we2 A  22 RQKWEWKVGTGLNGFGNVLNDLTNGGTKLTITVTGNKPILLGRTKEAFATPVDGIPQIAFTDYEGASVKLRNTDGETNKGLAYFVLPMKNAEGTKVGSVKVNASYAGVFGKGGVTSADGELFSLFADGSRAIFYGGLTTTVSGAALTSGSAAAARTELFGSLSRNDILGQIQRVNANITSLVDVAGSYREDMEYTDGTVVSAAYALGIANGQTIEATFNQAVTTSTQWSAPLNVAITYYDNKQMTGDFNGSVDIGGSITA 285
                                    31        41        51        61        71 ||     85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285
                                                                              73|                                                                                                                                                                                                               
                                                                               78
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WE2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WE2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WE2)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4we2)
 
  Sites
(no "Sites" information available for 4we2)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4we2)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4we2
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  FAEG1_ECOLX | P02970
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  FAEG1_ECOLX | P02970
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4WE2)

(-) Related Entries Specified in the PDB File

3hlr 3HLR CONTAINS A VARIANT OF THE SAME PROTEIN.