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(-) Description

Title :  STRUCTURE OF TRNA-PROCESSING ENZYME COMPLEX 3
 
Authors :  S. Yamashita, K. Tomita
Date :  04 Sep 14  (Deposition) - 15 Apr 15  (Release) - 27 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna Nucleotidyltransferase, Cca-Adding Enzyme, A-Adding Enzyme, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Yamashita, A. Martinez, K. Tomita
Measurement Of Acceptor-T Psi C Helix Length Of Trna For Terminal A76-Addition By A-Adding Enzyme.
Structure V. 23 830 2015
PubMed-ID: 25914059  |  Reference-DOI: 10.1016/J.STR.2015.03.013

(-) Compounds

Molecule 1 - POLY A POLYMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 443-824
    Gene: PCNB1, AQ_411
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5
    Synonym: A-ADDING ENZYME
 
Molecule 2 - RNA (74-MER)
    Chains: B
    Engineered: YES
    Organism Scientific: THERMOTOGA MARITIMA MSB8
    Organism Taxid: 243274
    Other Details: TRNAPHE FROM THERMOTOGA MARITIMA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CTP1Ligand/IonCYTIDINE-5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:18 , ARG A:21 , ARG A:103 , ARG A:104 , ASP A:105 , ASN A:109 , ASP A:149 , ARG A:152 , ARG A:155 , ARG A:162binding site for residue CTP A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WC5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WC5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WC5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WC5)

(-) Exons   (0, 0)

(no "Exon" information available for 4WC5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..eeeeehhhhhhhhh.....eeeeeee.hhhhhhhhhhhhh....eee....eeeeee..eeeeeee........hhhhhhhh..hhhhh.eee........ee...hhhhhhhh.ee.....hhhhhh.hhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wc5 A   1 MVGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETEPASLKEDLIRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHPVSFIEDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWNEKVLQKLYALRKVVDWHALEFSEERIDYGWLYLLILISNLDYERGKHFLEEMSAPSWVRETYKFMKFKLGSLKEELKKAKENYEVYRLLKPLHTSVLLLLMLEEELKEKIKLYLEKLRKVKLPKEKIEELKKGKELGERIEELKREIMN 381
                                    10        20        30        40        50        60        70        80 ||    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360|      374       
                                                                                                            82|                                                                                                                                                                                                                                                                        360|                
                                                                                                             93                                                                                                                                                                                                                                                                         365                


Chain B from PDB  Type:RNA  Length:74
                                                                                                          
                 4wc5 B   1 GGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCAC  74
                                    10        20        30        40        50        60        70
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WC5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WC5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WC5)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  O66728_AQUAE | O66728
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O66728_AQUAE | O66728: 1vfg 4wby 4wbz 4wc0 4wc1 4wc2 4wc3 4wc4 4wc6 4wc7 4x0a 4x0b

(-) Related Entries Specified in the PDB File

1vfg THE SAME PROTEIN COMPLEXED WITH DIFFERENT TRNA.
4wb1
4wb2
4wb3
4wb4
4wb6
4wb7
4wby
4wbz
4wc0