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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN PF1771 FROM PYROCOCCUS FURIOSUS SOLVED BY SULFUR SAD USING SWISS LIGHT SOURCE DATA
 
Authors :  T. Weinert, S. Waltersperger, V. Olieric, E. Panepucci, L. Chen, J. P. R M. Wang, B. C. Wang, Southeast Collaboratory For Structural Geno (Secsg)
Date :  04 Sep 14  (Deposition) - 10 Dec 14  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  C
Biol. Unit 1:  C  (4x)
Keywords :  Sulfur Sad, Case Studies, Swiss Light Source, Southeast Collaboratory For Structural Genomics, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Weinert, V. Olieric, S. Waltersperger, E. Panepucci, L. Chen, H. Zhang, D. Zhou, J. Rose, A. Ebihara, S. Kuramitsu, D. Li, N. Howe, G. Schnapp, A. Pautsch, K. Bargsten, A. E. Prota, P. Surana, J. Kottur, D. T. Nair, F. Basilico, V. Cecatiello, S. Pasqualato, A. Boland, O. Weichenrieder, B. C. Wang, M. O. Steinmetz, M. Caffrey, M. Wang
Fast Native-Sad Phasing For Routine Macromolecular Structur Determination.
Nat. Methods V. 12 131 2015
PubMed-ID: 25506719  |  Reference-DOI: 10.1038/NMETH.3211

(-) Compounds

Molecule 1
    Atcc: 43587
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PF1771
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : C
Biological Unit 1 (4x): C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WBX)

(-) Sites  (0, 0)

(no "Site" information available for 4WBX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WBX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr C:39 -Pro C:40
2Trp C:321 -Pro C:322

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WBX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WBX)

(-) Exons   (0, 0)

(no "Exon" information available for 4WBX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:298
                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeehhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhh.......eee...hhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhh.eeeee.hhhhh......hhhhhhhhhhhhhhhh.ee..........hhhhhhhh..ee.eee..hhhhhhhhhhh..eeeeee....hhhhhhhhhh....eeeeee.......hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wbx C   4 RFPFPVGEPDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAKAMTATSGPGFSLMQENIGYAVMTETPVVIVDVQRSGLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRLIKRIVEKIEKNKKDIFTYETYELEDAVATGIVARSALLLKIETIWPFDFELIERIAERVDKLYVPEMNLGQLYHLIKEGANGKAEVKLISKIGGEVHTPMEIFEFI 382
                                    13        23        33        43        53        63        73        83        93       103       113   ||  130       140       150       160       170       180       190       200||     266       276       290       314       324       334       344       354       364       374        
                                                                                                                                           117|                                                                         201|                       284|       299|                                                                    
                                                                                                                                            125                                                                          258                        289        314
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WBX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WBX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WBX)

(-) Gene Ontology  (4, 4)

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  Cis Peptide Bonds
    Thr C:39 - Pro C:40   [ RasMol ]  
    Trp C:321 - Pro C:322   [ RasMol ]  
 
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  Q8U046_PYRFU | Q8U046
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8U046_PYRFU | Q8U046: 1yd7

(-) Related Entries Specified in the PDB File

1yd7 STRUCTURE DETERMINED BY SE-MET SAD RELATED ID: SECSG-PFU-880080-001 RELATED DB: TARGETTRACK STRUCTURE DETERMINED BY SE-MET SAD