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(-) Description

Title :  CONSERVED HYPOTHETICAL PROTEIN PFU-1647980-001 FROM PYROCOCCUS FURIOSUS
 
Authors :  P. Horanyi, Q. Florence, W. Zhou, J. Chang, M. Zhao, J. Habel, H. Xu, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, W. Tempel, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  23 Dec 04  (Deposition) - 08 Feb 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Psi, Conserved Hypothetical Protein, Pyrococcus Furiosus, Hyperthermophile, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Horanyi, Q. Florence, W. Zhou, J. Chang, M. Zhao, J. Habel, H. Xu, L. Chen, D. Lee, D. Nguyen, S. -H. Chang, W. Tempel, D. Lin, H. Zhang, J. Praissman, F. E. Jenney Jr. , M. W. W. Adams, Z. -J. Liu, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics (Secsg)
Conserved Hypothetical Protein Pfu-1647980-001 From Pyrococcus Furiosus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 2261

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
2UNX6Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:144 , VAL A:146BINDING SITE FOR RESIDUE UNX A 388
2AC2SOFTWAREPHE A:14 , GLU A:43 , ALA A:47 , ARG A:185 , UNX A:391BINDING SITE FOR RESIDUE UNX A 389
3AC3SOFTWAREGLN A:16 , ASP A:18 , GLU A:19 , UNX A:391BINDING SITE FOR RESIDUE UNX A 390
4AC4SOFTWAREGLU A:19 , ARG A:185 , UNX A:389 , UNX A:390BINDING SITE FOR RESIDUE UNX A 391
5AC5SOFTWARESER A:76 , TRP A:77 , PRO A:107BINDING SITE FOR RESIDUE UNX A 392
6AC6SOFTWAREPRO A:37 , ILE A:38 , THR A:39 , SER A:42 , PHE A:45BINDING SITE FOR RESIDUE UNX A 393

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1YD7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:39 -Pro A:40

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YD7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1YD7)

(-) Exons   (0, 0)

(no "Exon" information available for 1YD7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
 aligned with Q8U046_PYRFU | Q8U046 from UniProtKB/TrEMBL  Length:387

    Alignment length:199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193         
         Q8U046_PYRFU     4 RFPFPVGEPDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAKAMTATSGPGFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRK 202
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1yd7A00 A:4-202  [code=3.40.50.970, no name defined]                                                                                                                                                    CATH domains
               Pfam domains -------------------POR_N-1yd7A01 A:23-202                                                                                                                                                               Pfam domains
         Sec.struct. author .......eeeeeehhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh...eeeeee.hhhhhhh...----.....eeeeee.--------------------------....eee...hhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhheeeeee.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yd7 A   4 RFPFPVGEPDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAmALYmPLVDGVVIQmEDEIASIAAAIGASWAGAKAmTATSGPGFSLmQENI----mTETPVVIVDVQ--------------------------DHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDAEVGHmRERVYIPNPDEIEIINRK 202
                                    13        23        33        43    |   53        63        73        83        93|   |  103       113|        -         -       143       153       163       173       183|      193         
                                                                       48-MSE        62-MSE               83-MSE     94-MSE    |        114                        141                                        184-MSE              
                                                                           52-MSE                                            103-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1YD7)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: THDP-binding (106)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8U046_PYRFU | Q8U046)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8U046_PYRFU | Q8U046: 4wbx

(-) Related Entries Specified in the PDB File

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