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(-) Description

Title :  Q/E MUTANT SA11 NSP4_CCD
 
Authors :  M. Viskovska, N. P. Sastri, J. M. Hyser, M. R. Tanner, L. B. Horton, B. San B. V. V. Prasad, M. K. Estes
Date :  02 Sep 14  (Deposition) - 24 Sep 14  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Nonstructural Protein, Enterotoxin, Ccd, Ca2+-Binding Mutant, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. P. Sastri, M. Viskovska, J. M. Hyser, M. R. Tanner, L. B. Horton, B. Sankaran, B. V. Prasad, M. K. Estes
Structural Plasticity Of The Coiled-Coil Domain Of Rotaviru Nsp4.
J. Virol. V. 88 13602 2014
PubMed-ID: 25231315  |  Reference-DOI: 10.1128/JVI.02227-14

(-) Compounds

Molecule 1 - NON-STRUCTURAL GLYCOPROTEIN NSP4
    ChainsA, B, C, D, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET46EK/LIC
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 95-146
    MutationYES
    Organism ScientificSIMIAN ROTAVIRUS A/SA11
    Organism Taxid10923

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:130 , ILE B:130 , ILE D:130binding site for residue GOL A 201
2AC2SOFTWAREGLN A:109 , HOH A:359 , HOH A:367 , MET B:106 , GLN C:109 , GLN D:109 , GLN E:109binding site for residue PO4 A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WBA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WBA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WBA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WBA)

(-) Exons   (0, 0)

(no "Exon" information available for 4WBA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:42
                                                                          
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                 4wba A  95 IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLTV 136
                                   104       114       124       134  

Chain B from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4wba B  95 IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLT 135
                                   104       114       124       134 

Chain C from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4wba C  95 IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLT 135
                                   104       114       124       134 

Chain D from PDB  Type:PROTEIN  Length:41
                                                                         
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                 4wba D  95 IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLT 135
                                   104       114       124       134 

Chain E from PDB  Type:PROTEIN  Length:42
                                                                          
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                 4wba E  95 IEKQMDRVVKEMRRQLEMIDKLTTRAIEAVELLKRIYDKLTV 136
                                   104       114       124       134  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WBA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WBA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WBA)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O92323_9REOV | O923231g1i 1g1j 2o1k
UniProtKB/TrEMBL
        O92323_9REOV | O923234wb4

(-) Related Entries Specified in the PDB File

4wb4