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(-) Description

Title :  THE CRYSTAL STRUCTURE OF HUMAN ABL1 WILD TYPE KINASE DOMAIN IN COMPLEX WITH AXITINIB
 
Authors :  E. Johnson, M. Mctigue, C. N. Cronin
Date :  28 Aug 14  (Deposition) - 11 Feb 15  (Release) - 18 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  B  (1x)
Biol. Unit 2:  A  (1x)
Keywords :  Kinase, Kinase Inhibitor, Axitinib, Activation Loop, Dfg-Out, Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Pemovska, E. Johnson, M. Kontro, G. A. Repasky, J. Chen, P. Wells, C. N. Cronin, M. Mctigue, O. Kallioniemi, K. Porkka, B. W. Murray, K. Wennerberg
Axitinib Effectively Inhibits Bcr-Abl1(T315I) With A Distinct Binding Conformation.
Nature V. 519 102 2015
PubMed-ID: 25686603  |  Reference-DOI: 10.1038/NATURE14119

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE ABL1
    Chains: B, A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 246-512
    Gene: ABL1, ABL, JTK7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x):  B
Biological Unit 2 (1x): A 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1AXI2Ligand/IonAXITINIB
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1AXI1Ligand/IonAXITINIB
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1AXI1Ligand/IonAXITINIB

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:253 , ALA B:269 , LYS B:271 , THR B:315 , GLU B:316 , PHE B:317 , MET B:318 , THR B:319 , GLY B:321 , ASN B:368 , LEU B:370 , ALA B:380 , PHE B:382 , HOH B:9182binding site for residue AXI B 9000
2AC2SOFTWAREGLY A:249 , TYR A:253 , ALA A:269 , LYS A:271 , THR A:315 , GLU A:316 , PHE A:317 , MET A:318 , THR A:319 , GLY A:321 , ASN A:368 , LEU A:370 , PHE A:382 , HOH A:9157binding site for residue AXI A 9000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WA9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WA9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WA9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WA9)

(-) Exons   (0, 0)

(no "Exon" information available for 4WA9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhh.eeeeeee.......eeeeee.hhheeeee..........eee.......eee....eehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.eee...hhh.eee.hhh.eee....eee.....eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wa9 A 236 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKEIKHPNLVQLLGVCTREPIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISD 504
                                   245       255       265     ||295       305   ||  318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498      
                                                             271|              309|                                                                                                                                                                                               
                                                              292               313                                                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhh.eeeeee.hhhh...eeeeee.hhheeeeeeee.....hhhhhhhhhhhhhhh.......eeeee.....eeeeee.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.eee...hhh.eee.hhh.eee....eee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh............hhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wa9 B 233 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEK 508
                                   242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WA9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WA9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WA9)

(-) Gene Ontology  (125, 125)

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  ABL1_HUMAN | P00519
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABL1_HUMAN | P00519: 1ab2 1abl 1awo 1bbz 1ju5 1opl 1zzp 2abl 2e2b 2f4j 2fo0 2g1t 2g2f 2g2h 2g2i 2gqg 2hiw 2hyy 2hz0 2hz4 2hzi 2o88 2v7a 3cs9 3eg0 3eg1 3eg2 3eg3 3egu 3k2m 3pyy 3qri 3qrj 3qrk 3t04 3ue4 3uyo 4j9b 4j9c 4j9d 4j9e 4j9f 4j9g 4j9h 4j9i 4jjb 4jjc 4jjd 4twp 4xey 4yc8 4zog 5dc0 5dc4 5dc9 5hu9 5mo4 5oaz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WA9)