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(-) Description

Title :  ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX
 
Authors :  C. Plaschka, L. Lariviere, L. Wenzeck, M. Hemann, D. Tegunov, E. V. Petr C. H. Borchers, W. Baumeister, F. Herzog, E. Villa, P. Cramer
Date :  29 Sep 14  (Deposition) - 04 Feb 15  (Release) - 16 Sep 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  7.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,T
Keywords :  Transcription, Transcription Initiation, Rna Polymerase Ii, General Transcription Factors (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Plaschka, L. Lariviere, L. Wenzeck, M. Seizl, M. Hemann, D. Tegunov E. V. Petrotchenko, C. H. Borchers, W. Baumeister, F. Herzog, E. Villa P. Cramer
Architecture Of The Rna Polymerase Ii-Mediator Core Initiation Complex.
Nature V. 518 376 2015
PubMed-ID: 25652824  |  Reference-DOI: 10.1038/NATURE14229

(-) Compounds

Molecule 1 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
    Chains: A
    EC Number: 2.7.7.6
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT 1, RNA POLYMERASE II SUBUNIT B1, DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT, RNA POLYMERASE II SUBUNIT B220
 
Molecule 2 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3
    Chains: C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT 3, RNA POLYMERASE II SUBUNIT B3, B44.5, DNA-DIRECTED RNA POLYMERASE II 45 KDA POLYPEPTIDE
 
Molecule 3 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
    Chains: B
    EC Number: 2.7.7.6
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT 2, B150, DNA-DIRECTED RNA POLYMERASE II 140 KDA POLYPEPTIDE
 
Molecule 4 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1
    Chains: E
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASES I,II,AND III SUBUNIT ABC1, ABC27, DNA-DIRECTED RNA POLYMERASES I,II,AND III 27 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I,II,AND III SUBUNIT RPABC 1
 
Molecule 5 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4
    Chains: D
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT B4, B32, DNA-DIRECTED RNA POLYMERASE II 32 KDA POLYPEPTIDE
 
Molecule 6 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7
    Chains: G
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT B7, B16
 
Molecule 7 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2
    Chains: F
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASES I,II,AND III SUBUNIT ABC2, ABC23, DNA-DIRECTED RNA POLYMERASES I,II,AND III 23 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I,II,AND III SUBUNIT RPABC 2
 
Molecule 8 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9
    Chains: I
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT B9, B12.6, DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9
 
Molecule 9 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3
    Chains: H
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASES I,II,AND III SUBUNIT ABC3, ABC14.4, ABC14 .5, DNA-DIRECTED RNA POLYMERASES I,II,AND III 14.5 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I,II,AND III SUBUNIT RPABC 3
 
Molecule 10 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11
    Chains: K
    Fragment: 2.7.7.6
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASE II SUBUNIT B11, B13.6, DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE
 
Molecule 11 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5
    Chains: J
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASES I,II,AND III SUBUNIT ABC5, ABC10-BETA, ABC8, DNA-DIRECTED RNA POLYMERASES I,II,AND III 8.3 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASES I,II,AND III SUBUNIT RPABC 5
 
Molecule 12 - TRANSCRIPTION INITIATION FACTOR IIB
    Chains: M
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: GENERAL TRANSCRIPTION FACTOR TFIIB, TRANSCRIPTION FACTOR E
 
Molecule 13 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4
    Chains: L
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Strain: BJ5464 RPB3 HIS-BIO
    Synonym: RNA POLYMERASES I,II,AND III SUBUNIT ABC4, ABC10-ALPHA, DNA-DIRECTED RNA POLYMERASES I,II,AND III SUBUNIT RPABC 4
 
Molecule 14 - TATA-BOX-BINDING PROTEIN
    Chains: O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 61-240
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: TATA SEQUENCE-BINDING PROTEIN, TBP, TATA-BINDING FACTOR, TATA-BOX FACTOR, TRANSCRIPTION FACTOR D, TRANSCRIPTION INITIATION FACTOR TFIID TBP SUBUNIT
 
Molecule 15 - NONTEMPLATE DNA
    Chains: N
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 16 - TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA
    Chains: Q
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SACCHAROMYCES MIKATAE
    Organism Taxid: 114525
 
Molecule 17 - RNA
    Chains: P
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 18 - TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT BETA
    Chains: R
    EC Number: 3.6.4.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 1-140,210-400
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: ATP-DEPENDENT HELICASE TFG2, TFIIF MEDIUM SUBUNIT, TFIIF-BETA, TRANSCRIPTION FACTOR G 54 KDA SUBUNIT
 
Molecule 19 - TEMPLATE DNA
    Chains: T
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516171819
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRT

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2ZN9Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:107 , CYS A:110 , CYS A:148 , CYS A:167BINDING SITE FOR RESIDUE ZN A2456
02AC2SOFTWARECYS A:67 , CYS A:70 , CYS A:77 , HIS A:80BINDING SITE FOR RESIDUE ZN A2457
03AC3SOFTWAREASP A:481 , ASP A:483 , ASP A:485 , A P:10BINDING SITE FOR RESIDUE MG A2458
04AC4SOFTWARECYS B:1163 , CYS B:1166 , CYS B:1182 , CYS B:1185BINDING SITE FOR RESIDUE ZN B2225
05AC5SOFTWARECYS C:86 , CYS C:88 , CYS C:92 , CYS C:95BINDING SITE FOR RESIDUE ZN C1269
06AC6SOFTWARECYS I:7 , CYS I:10 , CYS I:29 , CYS I:32BINDING SITE FOR RESIDUE ZN I1121
07AC7SOFTWARECYS I:75 , CYS I:78 , CYS I:103 , CYS I:106BINDING SITE FOR RESIDUE ZN I1122
08AC8SOFTWARECYS J:7 , CYS J:10 , CYS J:45 , CYS J:46BINDING SITE FOR RESIDUE ZN J1066
09AC9SOFTWARECYS L:31 , CYS L:34 , CYS L:48 , CYS L:51BINDING SITE FOR RESIDUE ZN L1071
10BC1SOFTWARECYS M:24 , CYS M:27 , CYS M:45 , CYS M:48BINDING SITE FOR RESIDUE ZN M1216

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V1N)

(-) Cis Peptide Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1Asp A:193 -Ala A:194
2Ala A:194 -Asp A:195
3Gln A:447 -Pro A:448
4Lys A:567 -Pro A:568
5Glu B:80 -Ser B:81
6Gly B:338 -Thr B:339
7Glu B:468 -Gln B:469
8Met B:473 -Ser B:474
9Val D:18 -Glu D:19
10Pro E:128 -Pro E:129
11Asn G:126 -Pro G:127
12Ile M:196 -His M:197
13His M:197 -Val M:198
14Glu O:108 -Pro O:109
15Lys O:199 -Pro O:200
16Phe Q:390 -Thr Q:391
17Asn Q:394 -Lys Q:395

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V1N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V1N)

(-) Exons   (0, 0)

(no "Exon" information available for 4V1N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........ee...eee....hhhhhhhhh..................................................eeeeeeeeee...hhhhhhhhhhhh............hhhhhhhhhh.hhhhhhhhhhhhhh.......eee.......eee........eeeee....eeeee............eeeeehhhhhhhhhhhhhhhhhhhh.......hhhh.eeeeeee.hhhhh..ee.....eeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh........eee...ee..hhhhhhh...hhhhhhh..eee..eeeeeeeee......eeeeehhhhhhheeeee....hhhhhhhhhhhh......eeeee.....eee................eeeee.....eeeee.....hhh.eeeeeeeee....eeee..hhhhhh......eeeee...hhhhhhhhhhhhhhhhhhee....ee....hhhhhhhhhhhh....eeehhhhhhhhhh..................eeehhhhhh........eee..............eee....eee...hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh...hhhhhhhhhh..ee.ee..ee........................ee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee.....ee.....eee.hhhhh..hhh.eeeee......hhhhhhhhhh................hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.......hhhhhhhhhh.........eeee.......hhhhhhhhhhhhh..hhhhheeeeeeee...........hhhhhhhh.......eeeeeeehhhhhhhh..hhhhhhhhhhhhhh..eeeee.......eeeeeee...hhhhhhhhhhhhhhhh........eeeeeeee..eee.....eee..eeeeeee..hhhhhhh.........ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..........hhhhh..hhhhhhh..hhhhhhhhhhhh..ee...hhhhhhhh.....hhhhh.eeeehhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4v1n A    3 GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMP 1455
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882       892       902       912       922       932       942       952       962       972       982       992      1002      1012      1022      1032      1042      1052      1062      1072      1093      1103      1113      1123      1133      1143      1153      1163      1173  ||  1193      1203      1213      1223      1233      1243|     1263      1273      1283      1293      1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              1080|                                                                                1176|                                                    1243|                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               1092                                                                                 1187                                                     1254                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:1156
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...eeeeee..........eeeeeeeeeeeeeeeeeee.....eee.hhhhhhhh....eeeeeeeee..eeee.........eeeeeeee.......hhhhhhhhhhhhhh..........eee..eeeee.eeeee....eeeee......eeeeeeee...........eeeeeee.........eeee......eeehhhhhhhhh....hhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhh......hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.........hhh.eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhhhhh...............eee....hhhhhhhhh.eee.........hhhhh................eee.....ee.....hhhhhhhhhh..eee.hhh........eeeee...eeeee.hhhhhhhhhhhhhhhh......eeeee....eeeee.....eeeeeeeee........ee..hhhhhhhhhhhhhh...hhhhhhhh..eeeeehhhhh...ee..hhhhh......................ee..hhhhhh..hhhhh.hhhh.hhhhhhhhhhhh.........hhhhh....eeee.......eehhhhhh........eeeeeeee..........eeeeehhhhhh....eeeeeeeeee..ee...ee.ee.......ee..........................eee.eeee...eee..ee.......eeeeeeeee.....eeeeeeeeeee......eee.....eeeeeeee......ee.......eee...hhhhhhhhhhhhhhhhhhhhhhhh..ee.......hhhhhhhhhhhh......eeeee......eeeeeeeeeeeeeee...hhhhh.eee..............hhhhh..eeehhhhhhhhhhhhhhhhhhhhhh....eeeeeee...........................eeeeeeehhhhhhhhhhhhh....eee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n B   20 DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDELKYELGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEADVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTDRSRDF 1224
                                    29        39        49        59        69        79        89        99       109       119       129       139 ||    164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       679       689       699       709     ||725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915   ||  938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      
                                                                                                                                                   141|  151|                                                                                                                                                                                                                                                                                                                                                502|                                                                                                                                                            668|                                  715|                                                                                                                                                                                                  919|                                                                                                                                                                                                                                                                                                   
                                                                                                                                                    146   163                                                                                                                                                                                                                                                                                                                                                 509                                                                                                                                                             678                                   722                                                                                                                                                                                                   933                                                                                                                                                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...eeeeeee..hhhhhhhhhhhhhhh..eeeeeeeeeeee....hhhhhhhhhhhh.eee.hhhhh...............eeeeeeeee......eeee.hhhee........eeee..........eeeee....eeeeeeeeeee....hhhhh.eeeeeee................hhhhhh..hhhhhhh.................eeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n C    3 EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD  268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262      


Chain D from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee............................eee.....eee.ee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n D    3 VSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIKEALVERRRAFKRSQKKTREKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQLGSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY  221
                                    12        22        32        42        52        62        72   ||  123       133       143       153       163       173       183       193       203       213        
                                                                                                    76|                                                                                                       
                                                                                                    118                                                                                                       


Chain E from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhh......hhhhhheee..hhhhhhhh.....eeeee....eehhhhhhhhhhhhhhh...eeeeee..eehhhhhh........eeeeeehhhhh.hhhhh....eeee.hhhhhhhhhhhhh.hhhhh.ee...hhhhhhh......eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n E    2 DQENERNISRLWRAFRTVKEMVKDRGYFITQEEVELPLEDFKAKYCDSMGRPQRKMMSFQANPTEESISKFPDMGSLWVEFCDEPSVGVKTMKTFVIHIQEKNFQTGIFVYQNNITPSAMKLVPSIPPATIETFNEAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVVKIIRKSETSGRYASYRICM  215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    


Chain F from PDB  Type:PROTEIN  Length:84
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhh......hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhh....eeeeee.....eeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                4v1n F   72 KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL  155
                                    81        91       101       111       121       131       141       151    


Chain G from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhh..hhhhhhhhhhhhhhh..ee...eeeeeeehhhhh.....ee......eeeeeeeeeeee......eeeeeeeeee..eeeeee..eeeeee.hhh....eee......eee....ee....eeeeeeeeeeee..eeeeeee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n G    1 MFFIKDLSLNITLHPSFFGPRMKQYLKTKLLEEVEGSCTGKFGYILCVLDYDNIDIQRGRILPTDGSAEFNVKYRAVVFKPFKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHAIGSIKEDYLGAI  171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain H from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeee.......eeeeeee......eeeeee...........eeeee........................eeee.eeeeee......eeeeeee..eeeeeee.hhhhh.......eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n H    2 SNTLFDDIFQVSEVDPGRYNKVCRIEAASTTQDQCKLTLDINVELFPVAAQDSLTVTIASSLTRSWRPPQAGDRSLADDYDYVMYGTAYKFEEVSKDLIAVYYSFGGLLMRLEGNYRNLNNLKQENAYLLIRR  146
                                    11        21        31        41        51        61 ||     83        93       103       113       123       133       143   
                                                                                        63|                                                                      
                                                                                         76                                                                      


Chain I from PDB  Type:PROTEIN  Length:119
                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeee....eeeee......eee....eeee.............hhhhhhh....ee...........eeeee...........eeeee.....eee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n I    2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQKNKRTQ  120
                                    11        21        31        41        51        61        71        81        91       101       111         


Chain J from PDB  Type:PROTEIN  Length:65
                                                                                                  
               SCOP domains ----------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhh...hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------- Transcript
                4v1n J    1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNP   65
                                    10        20        30        40        50        60     


Chain K from PDB  Type:PROTEIN  Length:115
                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh........eeeee......eeeeeee..hhhhhhhhhhhhhhh..eeeeeee.......eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n K    1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWNLQTLA  115
                                    10        20        30        40        50        60        70        80        90       100       110     


Chain L from PDB  Type:PROTEIN  Length:46
                                                                               
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author ........................................eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                4v1n L   25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR   70
                                    34        44        54        64      


Chain M from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeehhhheeee.....eee....hhhhhhh...............eeee...........ee......hhhhhhhhhhh........hhhhhhhhhhhhhh....hhhhhhhhhhhhhh.................hhhhhhhh......hhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4v1n M   22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEWRTFSNDDHNGDDPSRVGEASNPLLDGNNLSTRIGKGETTDMRFTKELNKAQGKNVKDNEVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNIAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQLIANGVVSLDNLPGVE  343
                                    31        41        51        61        71        81        91       101       111      |124       134       144       154       164       174       184       194       204       233       243       253       263       273       283       293       303       313       323       333       343
                                                                                                                          118|                                                                                        213|                                                                                                              
                                                                                                                           122                                                                                         233                                                                                                              


Chain N from PDB  Type:DNA  Length:50
                                                                                   
                4v1n N    5 AACAGTAGCACGCTGTGTATATAATAGTGTGTTGTACAGCACAACTGCGC   71
                                    14        24        34       |61        71
                                                                42|           
                                                                 60           


Chain O from PDB  Type:PROTEIN  Length:180
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeee.....hhhhhhhhh..ee........eeeee....eeeee....eeeeeee.hhhhhhhhhhhhhhhhhhhh.....eeeeeeeeeeeee.....hhhhhhhhh...ee........eeee......eeee....eeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4v1n O   61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM  240
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240


Chain P from PDB  Type:RNA  Length:6
                                       
                4v1n P    5 AUAUCA   10


Chain Q from PDB  Type:PROTEIN  Length:122
                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee..........eeeeeeee.hhh...........eeee....eeee......eeeeee......eeeeeee.....eeeee..eeeeeee........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                4v1n Q   92 DEDPNEYNEFPLRAIPKEDLENMRTHLLKFQSKKKINPVTDFHLPVRLHRKDYPWVMEDFDGYNTWVGSYEAGNSDSYVLLSVEDDGSFTMIPADKVYKFTARNKYATLTIDEAEKRMDKKS  412
                                   101       111       121       131       141 ||    350       360       370       380       390       400       410  
                                                                             143|                                                                     
                                                                              343                                                                     


Chain R from PDB  Type:PROTEIN  Length:105
                                                                                                                                          
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh.eeeeeeehhhhhhhhhhh........eeeeee....eeeeee..........eeeeeee....eeeeeeee.....eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                4v1n R   54 EESLDLDLERSNRQVWLVRLPMFLAEKWRDRNNLHGQELGKIRINKDGSKITLLLNENDNDSIPHEYDLELTKKVVENEYVFTEQNLKKTAIVGTVCHECQVMPS  227
                                    63        73        83        93       103       113       123       133    || 212       222     
                                                                                                              138|                   
                                                                                                               208                   


Chain T from PDB  Type:DNA  Length:58
                                                                                           
                4v1n T    2 GCGCAGTTGTGCTATGATATTTTACAACACACTATTATATACACAGCGTGCTACTGTT   68
                                    11        21 ||     40        50        60        
                                                23|                                   
                                                 33
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V1N)

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(no "CATH Domain" information available for 4V1N)

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(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPAB1_YEAST | P20434: 1dzf 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB2_YEAST | P20435: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB3_YEAST | P20436: 1a1d 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB4_YEAST | P40422: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPAB5_YEAST | P22139: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4c2m 4c3h 4c3i 4c3j 4v1m 4v1o 4x67 4x6a 4y52 4y7n 4ym7 5c3e 5c44 5c4a 5c4j 5c4x 5fj8 5fj9 5fja 5fmf 5fyw 5fz5 5g5l 5ip7 5ip9 5lmx 5m3f 5m3m 5m5w 5m5x 5m5y 5m64 5n5y 5n5z 5n60 5n61 5sva 5u5q
        RPB11_YEAST | P38902: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB1_YEAST | P04050: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2l0i 2lo6 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4gwq 4v1m 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB2_YEAST | P08518: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB3_YEAST | P16370: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB4_YEAST | P20433: 1nt9 1pqv 1wcm 1y14 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2ja5 2ja6 2ja7 2ja8 2r7z 2r92 2r93 2vum 3fki 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3po2 3po3 3qt1 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1o 5c3e 5c44 5c4a 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB7_YEAST | P34087: 1nt9 1pqv 1wcm 1y14 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2ja5 2ja6 2ja7 2ja8 2r7z 2r92 2r93 2vum 3fki 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3po2 3po3 3qt1 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1o 5c3e 5c44 5c4a 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        RPB9_YEAST | P27999: 1i3q 1i50 1i6h 1k83 1nik 1nt9 1pqv 1r5u 1r9s 1r9t 1sfo 1twa 1twc 1twf 1twg 1twh 1wcm 1y1v 1y1w 1y1y 1y77 2b63 2b8k 2e2h 2e2i 2e2j 2ja5 2ja6 2ja7 2ja8 2nvq 2nvt 2nvx 2nvy 2nvz 2r7z 2r92 2r93 2vum 2yu9 3cqz 3fki 3gtg 3gtj 3gtk 3gtl 3gtm 3gto 3gtp 3gtq 3h3v 3hou 3hov 3how 3hox 3hoy 3hoz 3i4m 3i4n 3j0k 3j1n 3k1f 3k7a 3m3y 3m4o 3po2 3po3 3qt1 3rzd 3rzo 3s14 3s15 3s16 3s17 3s1m 3s1n 3s1q 3s1r 3s2d 3s2h 4a3b 4a3c 4a3d 4a3e 4a3f 4a3g 4a3i 4a3j 4a3k 4a3l 4a3m 4a93 4bbr 4bbs 4bxx 4bxz 4by1 4by7 4v1m 4v1o 4x67 4x6a 4y52 4y7n 5c3e 5c44 5c4a 5c4j 5c4x 5fmf 5fyw 5fz5 5ip7 5ip9 5sva 5u5q
        T2FB_YEAST | P41896: 4v1o 5fmf 5fyw 5fz5 5sva
        TBP_YEAST | P13393: 1ngm 1nh2 1rm1 1tba 1tbp 1ytb 1ytf 4b0a 4v1o 5fmf 5fyw 5fz5 5sva
        TF2B_YEAST | P29055: 3k1f 3k7a 4bbr 4bbs 4v1o 5fmf 5fyw 5fz5 5sva
UniProtKB/TrEMBL
        A0A0H2UKZ8_S | A0A0H2UKZ8: 4v1o

(-) Related Entries Specified in the PDB File

4v1m ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX
4v1o ARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX RELATED ID: EMD-2785 RELATED DB: EMDB