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(-) Description

Title :  CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU DOMAIN IN THE ELONGATION ARREST CONFORMATION
 
Authors :  L. Bousset, C. Mary, M. A. Brooks, A. Scherrer, K. Strub, S. Cusack
Date :  01 Sep 14  (Deposition) - 05 Nov 14  (Release) - 03 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.22
Chains :  Asym./Biol. Unit :  A,B,R
Keywords :  Signaling Protein, Signal Recognition Particle, Translation, Rna, Rna Folding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Bousset, C. Mary, M. A. Brooks, A. Scherrer, K. Strub, S. Cusack
Crystal Structure Of A Signal Recognition Particle Alu Domain In The Elongation Arrest Conformation.
Rna V. 20 1955 2014
PubMed-ID: 25336584  |  Reference-DOI: 10.1261/RNA.047209.114

(-) Compounds

Molecule 1 - SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEH9
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET9A
    Fragment: RESIDUES 1-85
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SRP9
 
Molecule 2 - SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEH14DELTAR
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET9A
    Fragment: RESIDUES 1-107
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SRP14,18 KDA ALU RNA-BINDING PROTEIN
 
Molecule 3 - SRP RNA
    Chains: R
    Fragment: ALU DOMAIN, RESIDUES 1-89 AND RESIDUES 289-314
    Organism Scientific: PYROCOCCUS HORIKOSHII OT3
    Organism Taxid: 70601
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1CCC1Mod. NucleotideCYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4UYK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UYK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UYK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UYK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UYK)

(-) Exons   (0, 0)

(no "Exon" information available for 4UYK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh....eeeeeee....eeeeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 4uyk A   2 PQYQTWEEFSRAAEKLYLADPmKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKFHSQLmRLmVAKEARNVTm  83
                                    11        21 |      31        41        51        61        71 |      81 |
                                                23-MSE                                         70-MSE       83-MSE
                                                                                                  73-MSE      


Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhhhhhhh.....eeeeeeee..............eeeeeee....eeeeeeehhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4uyk B   1 mVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKEPADNKCLLRATDGKKKISTVVSSKEVNKFQmAYSNLLRANmDGLKKR  97
                            |       10        20        30        40 ||     57        67        77   |    87   |    97
                            |                                       42|                             81-MSE    91-MSE  
                            1-MSE                                    50                                               


Chain R from PDB  Type:RNA  Length:134
                                                                                                                                                                      
                 4uyk R   6 GGGGCUAGGCCGGGGGGUUCGGCGUCCCCUGUAACCGGAAACCGCCGAUAUGCCGGGGCCGAAGCCCGAGGGGCGGUUCCCGAAGCCGCCUCUGUAAGGAGGCGGUGGAGGGUUCCCACCCUCGGGCGUGCCUc 139
                                    15        25        35        45        55        65        75        85        95       105       115       125       135   |
                                                                                                                                                               139-CCC
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UYK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UYK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UYK)

(-) Gene Ontology  (19, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SRP09_HUMAN | P49458: 1e8o 1e8s 1ry1 4uyj 5aox
        SRP14_HUMAN | P37108: 1e8o 1e8s 1ry1 4uyj 5aox

(-) Related Entries Specified in the PDB File

4uyj CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU DOMAIN IN THE ELONGATION ARREST CONFORMATION