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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A SIGNAL RECOGNITION PARTICLE ALU DOMAIN IN THE ELONGATION ARREST CONFORMATION
Keywords SIGNALING PROTEIN, SIGNAL RECOGNITION PARTICLE, TRANSLATION, RNA FOLDING
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN  A 82 640 32
2  Protein   SIGNAL RECOGNITION PARTICLE 14 KDA PROTEIN  B 90 681 24
3  RNA    R 134 2859 23
total       306 4180 79

Proteins
Unit 1 PRO2 GLN3 TYR4 GLN5 THR6 TRP7 GLU8 GLU9 PHE10 SER11 ARG12 ALA13 ALA14 GLU15 LYS16 LEU17 TYR18 LEU19 ALA20 ASP21 PRO22 MSE23 LYS24 ALA25 ARG26 VAL27 VAL28 LEU29 LYS30 TYR31 ARG32 HIS33 SER34 ASP35 GLY36 ASN37 LEU38 CYS39 VAL40 LYS41 VAL42 THR43 ASP44 ASP45 LEU46 VAL47 CYS48 LEU49 VAL50 TYR51 LYS52 THR53 ASP54 GLN55 ALA56 GLN57 ASP58 VAL59 LYS60 LYS61 ILE62 GLU63 LYS64 PHE65 HIS66 SER67 GLN68 LEU69 MSE70 ARG71 LEU72 MSE73 VAL74 ALA75 LYS76 GLU77 ALA78 ARG79 ASN80 VAL81 THR82 MSE83
Unit 2 MSE1 VAL2 LEU3 LEU4 GLU5 SER6 GLU7 GLN8 PHE9 LEU10 THR11 GLU12 LEU13 THR14 ARG15 LEU16 PHE17 GLN18 LYS19 CYS20 ARG21 THR22 SER23 GLY24 SER25 VAL26 TYR27 ILE28 THR29 LEU30 LYS31 LYS32 TYR33 ASP34 GLY35 ARG36 THR37 LYS38 PRO39 ILE40 PRO41 LYS42 GLU50 PRO51 ALA52 ASP53 ASN54 LYS55 CYS56 LEU57 LEU58 ARG59 ALA60 THR61 ASP62 GLY63 LYS64 LYS65 LYS66 ILE67 SER68 THR69 VAL70 VAL71 SER72 SER73 LYS74 GLU75 VAL76 ASN77 LYS78 PHE79 GLN80 MSE81 ALA82 TYR83 SER84 ASN85 LEU86 LEU87 ARG88 ALA89 ASN90 MSE91 ASP92 GLY93 LEU94 LYS95 LYS96 ARG97

Nucleic acids
Unit 3 G6 G7 G8 G9 C10 U11 A12 G13 G14 C15 C16 G17 G18 G19 G20 G21 G22 U23 U24 C25 G26 G27 C28 G29 U30 C31 C32 C33 C34 U35 G36 U37 A38 A39 C40 C41 G42 G43 A44 A45 A46 C47 C48 G49 C50 C51 G52 A53 U54 A55 U56 G57 C58 C59 G60 G61 G62 G63 C64 C65 G66 A67 A68 G69 C70 C71 C72 G73 A74 G75 G76 G77 G78 C79 G80 G81 U82 U83 C84 C85 C86 G87 A88 A89 G90 C91 C92 G93 C94 C95 U96 C97 U98 G99 U100 A101 A102 G103 G104 A105 G106 G107 C108 G109 G110 U111 G112 G113 A114 G115 G116 G117 U118 U119 C120 C121 C122 A123 C124 C125 C126 U127 C128 G129 G130 G131 C132 G133 U134 G135 C136 C137 U138 CCC139

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany