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(-) Description

Title :  MOLECULAR GENETIC AND CRYSTAL STRUCTURAL ANALYSIS OF 1-(4-HYDROXYPHENYL)-ETHANOL DEHYDROGENASE FROM AROMATOLEUM AROMATICUM EBN1
 
Authors :  I. Buesing, H. W. Hoeffken, M. Breuer, L. Woehlbrand, B. Hauer, R. Rabus
Date :  28 Jun 14  (Deposition) - 08 Jul 15  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Oxidoreductase, Short Chain Dehydrogenase, Aromatic Compounds, Anaerobic Degradation, Alcohol Dehydrogenase, Molecular Genetics, Stereochemistry (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Busing, H. W. Hoffken, M. Breuer, L. Wohlbrand, B. Hauer, R. Rabus
Molecular Genetic And Crystal Structural Analysis Of 1-(4- Hydroxyphenyl)-Ethanol Dehydrogenase From 'Aromatoleum Aromaticum' Ebn1.
J. Mol. Microbiol. Biotechnol. V. 25 327 2015
PubMed-ID: 26488297  |  Reference-DOI: 10.1159/000439113

(-) Compounds

Molecule 1 - CYCLOHEXANOL DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.1.311
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: AROMATOLEUM AROMATICUM EBN1
    Organism Taxid: 76114
    Synonym: HYDROXYPHENYL-ETHANOL DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 15)

Asymmetric Unit (5, 15)
No.NameCountTypeFull Name
11PS3Ligand/Ion3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2ACT3Ligand/IonACETATE ION
3BCT2Ligand/IonBICARBONATE ION
4MG5Ligand/IonMAGNESIUM ION
5NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (4, 20)
No.NameCountTypeFull Name
11PS6Ligand/Ion3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2ACT6Ligand/IonACETATE ION
3BCT4Ligand/IonBICARBONATE ION
4MG-1Ligand/IonMAGNESIUM ION
5NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:12 , GLY A:14 , ASN A:15 , GLY A:16 , ILE A:17 , ASP A:36 , ILE A:37 , TRP A:41 , ALA A:61 , ASP A:62 , THR A:63 , ASN A:89 , ALA A:90 , GLY A:91 , ILE A:113 , ILE A:140 , SER A:141 , TYR A:155 , LYS A:159 , PRO A:185 , ALA A:186 , ILE A:188 , THR A:190 , ACT A:1250 , HOH A:2020 , HOH A:2026 , HOH A:2092 , HOH A:2133 , HOH A:2155 , HOH A:2181 , HOH A:2201 , HOH A:2266 , HOH A:2267 , HOH A:2268 , HOH A:2269 , HOH A:2270BINDING SITE FOR RESIDUE NAD A1249
02AC2SOFTWAREGLY B:12 , GLY B:14 , ASN B:15 , GLY B:16 , ILE B:17 , ASP B:36 , ILE B:37 , TRP B:41 , ALA B:61 , ASP B:62 , THR B:63 , ASN B:89 , ALA B:90 , GLY B:91 , ILE B:113 , ILE B:140 , SER B:141 , TYR B:155 , LYS B:159 , PRO B:185 , ALA B:186 , PHE B:187 , ILE B:188 , THR B:190 , ACT B:1250 , HOH B:2018 , HOH B:2022 , HOH B:2086 , HOH B:2113 , HOH B:2133 , HOH B:2172 , HOH B:2206 , HOH B:2207 , HOH B:2208 , HOH B:2209BINDING SITE FOR RESIDUE NAD B1249
03AC3SOFTWARESER A:142 , TYR A:155 , NAD A:1249 , HOH A:2182 , HOH A:2266BINDING SITE FOR RESIDUE ACT A1250
04AC4SOFTWARESER B:142 , TYR B:155 , NAD B:1249 , HOH B:2206 , HOH B:2210BINDING SITE FOR RESIDUE ACT B1250
05AC5SOFTWAREGLY A:174 , SER A:175 , GLY A:177 , LEU A:198 , ARG A:202 , HOH A:2240 , LEU B:210 , ARG B:211 , ARG B:212BINDING SITE FOR RESIDUE 1PS B1251
06AC6SOFTWAREILE A:92 , SER A:93 , GLY A:94 , ARG A:109 , HOH A:2271 , HOH A:2272BINDING SITE FOR RESIDUE 1PS A1251
07AC7SOFTWAREGLU A:95 , GLU A:101 , THR A:103 , GLN A:106 , HOH A:2139 , HOH A:2149 , THR B:103 , ASP B:104 , ALA B:105 , HOH B:2124BINDING SITE FOR RESIDUE 1PS A1252
08AC8SOFTWAREILE B:92 , GLY B:94 , ARG B:109 , HOH B:2212 , HOH B:2213 , HOH B:2214BINDING SITE FOR RESIDUE BCT B1252
09AC9SOFTWAREARG B:179 , SER B:228 , ASP B:229 , HOH B:2008 , HOH B:2146BINDING SITE FOR RESIDUE BCT B1253
10BC1SOFTWAREHOH A:2060 , HOH A:2061 , HOH A:2062 , HOH A:2069 , HOH A:2275 , HOH A:2276BINDING SITE FOR RESIDUE MG A1257
11BC2SOFTWAREARG A:179 , SER A:228 , ASP A:229 , HOH A:2012 , HOH A:2168BINDING SITE FOR RESIDUE ACT A1253
12BC3SOFTWAREARG B:248 , HOH B:2200 , HOH B:2201 , HOH B:2205BINDING SITE FOR RESIDUE MG B1254
13BC4SOFTWAREARG A:248 , HOH A:2259 , HOH A:2261 , HOH A:2265BINDING SITE FOR RESIDUE MG A1254
14BC5SOFTWAREGLU A:131 , HOH A:2112 , HOH A:2164 , HOH A:2165 , HOH A:2166 , HOH A:2273BINDING SITE FOR RESIDUE MG A1255
15BC6SOFTWARESER A:237 , TYR A:238 , HOH A:2245 , HOH A:2246 , HOH A:2248 , HOH A:2274BINDING SITE FOR RESIDUE MG A1256

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4URF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4URF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4URF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4URF)

(-) Exons   (0, 0)

(no "Exon" information available for 4URF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urf A   1 MLLEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIGIEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNVPLETRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGGYLAR 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        


Chain B from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4urf B   1 MLLEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIGIEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNVPLETRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGGYLAR 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4URF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4URF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4URF)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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4ure MOLECULAR GENETIC AND CRYSTAL STRUCTURAL ANALYSIS OF 1 -(4-HYDROXYPHENYL)-ETHANOL DEHYDROGENASE FROM AROMATOLEUM AROMATICUM EBN1