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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LIPOTEICHOIC ACID SYNTHASE LTAP FROM LISTERIA MONOCYTOGENES
 
Authors :  I. Campeotto, P. Freemont, A. Grundling
Date :  06 Jun 14  (Deposition) - 27 Aug 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Gram Positive, Cell Wall (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Campeotto, M. G. Percy, J. T. Macdonald, A. Forster, P. S. Freemont, A. Grundling
Structural And Mechanistic Insight Into The Listeria Monocytogenes Two-Enzyme Lipoteichoic Acid Synthesis System
J. Biol. Chem. V. 289 28054 2014
PubMed-ID: 25128528  |  Reference-DOI: 10.1074/JBC.M114.590570

(-) Compounds

Molecule 1 - LIPOTEICHOIC ACID PRIMASE
    Chains: A, B
    EC Number: 2.7.8.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Fragment: EXTRACELLULAR CATALYTIC DOMAIN, RESIDUES 193-606
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E
    Synonym: LMO0644 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
11PE3Ligand/IonPENTAETHYLENE GLYCOL
2CL3Ligand/IonCHLORIDE ION
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP B:281 , PRO B:292 , SER B:293 , TYR B:296 , THR B:297 , ASN B:298BINDING SITE FOR RESIDUE CL B1611
2AC2SOFTWARELYS B:212 , ILE B:510 , ASP B:511 , ASN B:540 , TYR B:541BINDING SITE FOR RESIDUE CL B1612
3AC3SOFTWARESER B:267 , ASN B:268 , GLN B:269 , GLU B:502 , ILE B:503BINDING SITE FOR RESIDUE CL B1613
4AC4SOFTWARETYR A:222 , ASN A:499 , LYS A:504 , ASN A:505 , ILE A:534 , SER A:537 , HOH A:2157BINDING SITE FOR RESIDUE 1PE A1611
5AC5SOFTWARETYR B:222 , ASN B:499 , GLY B:501 , GLU B:502 , LYS B:504 , ASN B:505 , ILE B:534 , LEU B:535 , SER B:537 , HOH B:2233 , HOH B:2250BINDING SITE FOR RESIDUE 1PE B1614
6AC6SOFTWAREARG B:241 , ASN B:245 , ASN B:268 , ASN B:473 , SER B:475 , THR B:476 , HOH B:2037BINDING SITE FOR RESIDUE 1PE B1615
7AC7SOFTWAREHOH A:2125 , GLU B:237 , THR B:279 , ASP B:455 , HIS B:456BINDING SITE FOR RESIDUE MG B1616
8AC8SOFTWAREGLU A:237 , THR A:279 , ASP A:455 , HIS A:456 , HOH A:2021BINDING SITE FOR RESIDUE MG A1612

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UOP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Met A:396 -Pro A:397
2Glu A:481 -Pro A:482
3Met B:396 -Pro B:397
4Glu B:481 -Pro B:482

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UOP)

(-) Exons   (0, 0)

(no "Exon" information available for 4UOP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh................eeeeeee...hhhhh..ee..ee.hhhhhhhh...eee..ee.....hhhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeee.....hhhhhhhhhhhh...eee.........ee..eehhhhhhhhhhhhhhhhhhh...eeeeee..........hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhh.........hhhhhh..eeee.......ee....ee..hhhhhhhhhh............hhhh.....eee.......eee...eeee........eeee....ee..hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4uop A 203 ITAKNVNDIKGVSVKSNPDYFGAAKGKNLIIVQLESFQRNLTNVKINGQSITPTLDGLQNETMYSNQFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQLKAEPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATNYDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRN 610
                                   212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602        


Chain B from PDB  Type:PROTEIN  Length:409
                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh................eeeeeee...hhhhh..ee..ee.hhhhhhhh...eee..ee.....hhhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeee.....hhhhhhhhhhhh...eeehhhhhh...ee..eehhhhhhhhhhhhhhhhhhh...eeeeee..........hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhh.........hhhhhh..eeee.......ee....ee..hhhhhhhhhh............hhhh.....eee.......eee...eeee........eeee....ee..hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uop B 202 DITAKNVNDIKGVSVKSNPDYFGAAKGKNLIIVQLESFQRNLTNVKINGQSITPTLDGLQNETMYSNQFFQTVSKSNTADAEWSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAVGFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFDIPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHHIIKTDQLPEEQKKYVNRSTQLKAEPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPTVMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATNYDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRN 610
                                   211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UOP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UOP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UOP)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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4uoo STRUCTURE OF LIPOTEICHOIC ACID SYNTHASE LTAS FROM LISTERIA MONOCYTOGENES
4uor STRUCTURE OF LIPOTEICHOIC ACID SYNTHASE LTAS FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH GLYCEROL PHOSPHATE