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(-) Description

Title :  STRUCTURE OF LIPOTEICHOIC ACID SYNTHASE LTAS FROM LISTERIA MONOCYTOGENES
 
Authors :  I. Campeotto, P. Freemont, A. Grundling
Date :  06 Jun 14  (Deposition) - 27 Aug 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Keywords :  Transferase, Lipoteichoic Acid Synthesis, Cell Wall, Gram Positive (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Campeotto, M. G. Percy, J. T. Macdonald, A. Forster, P. S. Freemont, A. Grundling
Structural And Mechanistic Insight Into The Listeria Monocytogenes Two-Enzyme Lipoteichoic Acid Synthesis System
J. Biol. Chem. V. 289 28054 2014
PubMed-ID: 25128528  |  Reference-DOI: 10.1074/JBC.M114.590570

(-) Compounds

Molecule 1 - LIPOTEICHOIC ACID SYNTHASE
    Chains: A, B, C, D, E
    EC Number: 2.7.8.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Fragment: EXTRACELLULAR CATALYTIC DOMAIN, RESIDUES 226-653
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E
    Synonym: LMO0927 PROTEIN

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A    
Biological Unit 2 (1x):  B   
Biological Unit 3 (1x):   C  
Biological Unit 4 (1x):    D 
Biological Unit 5 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1MG5Ligand/IonMAGNESIUM ION
2TPO5Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TPO1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:263 , TPO A:307 , ASP A:481 , HIS A:482BINDING SITE FOR RESIDUE MG A1645
2AC2SOFTWAREGLU B:263 , TPO B:307 , ASP B:481 , HIS B:482BINDING SITE FOR RESIDUE MG B1645
3AC3SOFTWAREGLU C:263 , TPO C:307 , ASP C:481 , HIS C:482BINDING SITE FOR RESIDUE MG C1645
4AC4SOFTWAREGLU D:263 , TPO D:307 , ASP D:481 , HIS D:482BINDING SITE FOR RESIDUE MG D1645
5AC5SOFTWAREGLU E:263 , TPO E:307 , ASP E:481 , HIS E:482BINDING SITE FOR RESIDUE MG E1645

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UOO)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1Gln A:410 -Pro A:411
2Phe A:423 -Pro A:424
3Glu A:429 -Lys A:430
4Gln B:410 -Pro B:411
5Phe B:423 -Pro B:424
6Glu B:429 -Lys B:430
7Gln C:410 -Pro C:411
8Phe C:423 -Pro C:424
9Glu C:429 -Lys C:430
10Gln D:410 -Pro D:411
11Phe D:423 -Pro D:424
12Glu D:429 -Lys D:430
13Gln E:410 -Pro E:411
14Phe E:423 -Pro E:424
15Glu E:429 -Lys E:430

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UOO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UOO)

(-) Exons   (0, 0)

(no "Exon" information available for 4UOO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh..eeee..ee......hhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeeee....hhhhhhhhhhhhh..eeehhhhh..hhhh......hhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee........hhhhhhhhhh...hhhhhhhh....eeee......eee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoo A 230 VTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNFFHQTGQGKtADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNK 644
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639     
                                                                                                       307-TPO                                                                                                                                                                                                                                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh..eeee..ee......hhhhhhhhhhhh.......hhhhhh......hhhhhh.....eeeeee....hhhhhhhhhhhhh..eeehhhhh............hhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee........hhhhhhhhhh...hhhhhhhh....eeee......eee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoo B 230 VTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNFFHQTGQGKtADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNK 644
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639     
                                                                                                       307-TPO                                                                                                                                                                                                                                                                                                                                             


Chain C from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh..eeee..ee......hhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeeee....hhhhhhhhhhhhh..eeehhhhh..hhh.ee..eehhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee........hhhhhhhhhh...hhhhhhhh....eeee......eee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoo C 230 VTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNFFHQTGQGKtADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNK 644
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639     
                                                                                                       307-TPO                                                                                                                                                                                                                                                                                                                                             


Chain D from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhh...eeee..ee......hhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeeee....hhhhhhhhhhhhh..eeehhhhh..hhh.ee..eehhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee........hhhhhhhhhh...hhhhhhhh....eeee......eee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoo D 230 VTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNFFHQTGQGKtADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNK 644
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639     
                                                                                                       307-TPO                                                                                                                                                                                                                                                                                                                                             


Chain E from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..............eeeeeee...hhhhh..ee..ee.hhhhhhhhhh..eeee..ee......hhhhhhhhhhhh.......hhhhhh......hhhhhhhh...eeeeee....hhhhhhhhhhhhh..eeehhhhh..hhhh......hhhhhhhhhhhhhhh....eeeeee.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee........hhhhhhhhhh...hhhhhhhh....eeee......eee...ee..hhhhhhhhhh......................ee.....ee...eeee..eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uoo E 230 VTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNGEEVTPFINSFFKDQNTLSFTNFFHQTGQGKtADSEMLLENSLYGLPQGSAFTTKGQNTYESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGLKDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQTARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQAQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLVPFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLLRFYAPDGFKKVDPSKYNYNK 644
                                   239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639     
                                                                                                       307-TPO
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UOO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UOO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UOO)

(-) Gene Ontology  (6, 6)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q8Y8H6_LISMO | Q8Y8H6: 4uor

(-) Related Entries Specified in the PDB File

4uop CRYSTAL STRUCTURE OF THE LIPOTEICHOIC ACID SYNTHASE LTAP FROM LISTERIA MONOCYTOGENES
4uor STRUCTURE OF LIPOTEICHOIC ACID SYNTHASE LTAS FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH GLYCEROL PHOSPHATE