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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-1

Authors :   A. Sarre, M. Okvist, T. Klar, D. Hall, A. O. Smalas, S. Mcsweeney, J. Timm E. Moe

Date :   28 May 14 (Deposition) - 10 Jun 15 (Release) - 12 Aug 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A

Keywords :   Lyase, Fes Cluster, Base Excision Repair, Dna Glycosylase, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Sarre, M. Okvist, T. Klar, D. R. Hall, A. O. Smalas, S. Mcsweeney, J. Timmins, E. Moe
Structural And Functional Characterization Of Two Unusual Endonuclease Iii Enzymes From Deinococcus Radiodurans.
J. Struct. Biol. V. 191 87 2015
PubMed-ID: 26172070 | Reference-DOI: 10.1016/J.JSB.2015.05.009

Molecule 1 - ENDONUCLEASE III-1
	Chains	:	A
	EC Number	:	4.2.99.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST14
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	PLYSS
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	DEINOCOCCUS RADIODURANS R1
	Organism Taxid	:	243230

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 5)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SF4	1	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:217 , CYS A:224 , CYS A:227 , CYS A:233	BINDING SITE FOR RESIDUE SF4 A1248
2	AC2	SOFTWARE	ILE A:115 , LYS A:116 , ALA A:118 , GLY A:120 , GLY A:121 , HOH A:2067	BINDING SITE FOR RESIDUE MG A1249
3	AC3	SOFTWARE	THR A:140 , LEU A:142 , VAL A:145 , HOH A:2074 , HOH A:2077	BINDING SITE FOR RESIDUE MG A1250
4	AC4	SOFTWARE	ASN A:15 , ARG A:18 , ARG A:232 , CYS A:233 , ASP A:234	BINDING SITE FOR RESIDUE ACT A1251
5	AC5	SOFTWARE	HOH A:2092 , HOH A:2094 , HOH A:2126	BINDING SITE FOR RESIDUE ACT A1252

(no "SS Bond" information available for 4UNF)

(no "Cis Peptide Bond" information available for 4UNF)

(no "SAP(SNP)/Variant" information available for 4UNF)

(no "PROSITE Motif" information available for 4UNF)

(no "Exon" information available for 4UNF)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh......hhhhh.hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4unf A  12 APLNAARPAEERAALLAWVKERLHEEYGDQDPTPRRDPMHELISTILSQRTTHADEEAAYQELRTLGDWDAITLAPTDAVAHAIRRSNYPESKAPRIQETLRRIKAAPGGYDLDFLRDLPVKDALKWLTDLPGVGVKTASLVLLFNYARPVFPVDTHVHRVSTRVGVIPRMGEQAAHRALLALLPPDPPYLYELHINFLSHGRQVCTWTRPKCGKCILRERCDAYALYGDKVPSFS 247
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4UNF)

(no "CATH Domain" information available for 4UNF)

(no "Pfam Domain" information available for 4UNF)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4unf)

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4uob	CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Gene Ontology (13, 13)

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