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(-) Description

Title :  CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-3
 
Authors :  A. Sarre, M. Okvist, T. Klar, D. Hall, A. O. Smalas, S. Mcsweeney, J. Timm E. Moe
Date :  02 Jun 14  (Deposition) - 10 Jun 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.31
Chains :  Asym./Biol. Unit :  A
Keywords :  Lyase, Endonuclease Iii, Fes Cluster, Base Excision Repair, Dna Glycosylase, Deinococcus Radiodurans (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Sarre, M. Okvist, T. Klar, D. R. Hall, A. O. Smalas, S. Mcsweeney, J. Timmins, E. Moe
Structural And Functional Characterization Of Two Unusual Endonuclease Iii Enzymes From Deinococcus Radiodurans.
J. Struct. Biol. V. 191 87 2015
PubMed-ID: 26172070  |  Reference-DOI: 10.1016/J.JSB.2015.05.009

(-) Compounds

Molecule 1 - ENDONUCLEASE III-3
    Chains: A
    EC Number: 4.2.99.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector: PDEST14
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 76-338
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CO1Ligand/IonCOBALT (II) ION
3SF41Ligand/IonIRON/SULFUR CLUSTER
4SO42Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:301 , CYS A:308 , CYS A:311 , CYS A:317 , ALA A:320BINDING SITE FOR RESIDUE SF4 A1329
2AC2SOFTWAREHIS A:192 , HIS A:197 , HIS A:305 , GLU A:327 , HOH A:2404 , HOH A:2436BINDING SITE FOR RESIDUE CO A1330
3AC3SOFTWARETHR A:138 , ARG A:139 , HOH A:2116 , HOH A:2125 , HOH A:2437 , HOH A:2439 , HOH A:2440 , HOH A:2441BINDING SITE FOR RESIDUE SO4 A1331
4AC4SOFTWAREARG A:139 , ARG A:295 , ARG A:298 , HOH A:2384 , HOH A:2386 , HOH A:2388 , HOH A:2442BINDING SITE FOR RESIDUE SO4 A1332
5AC5SOFTWAREPRO A:122 , ASP A:123 , GLY A:126 , TRP A:156 , HOH A:2154BINDING SITE FOR RESIDUE ACT A1333
6AC6SOFTWAREARG A:108 , PRO A:113 , GLU A:114 , LEU A:115 , HOH A:2049BINDING SITE FOR RESIDUE ACT A1334
7AC7SOFTWARETYR A:185 , GLY A:227 , GLY A:229 , THR A:232 , HOH A:2297BINDING SITE FOR RESIDUE ACT A1335
8AC8SOFTWARELYS A:270 , ARG A:273 , HOH A:2012 , HOH A:2354BINDING SITE FOR RESIDUE ACT A1336

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UOB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UOB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UOB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UOB)

(-) Exons   (0, 0)

(no "Exon" information available for 4UOB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh.hhhhh.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uob A  87 SRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGLIRTILSQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEATLKSAGGGLSRMKADYIYGILAHLQEHHGGLSLRFLREFPHTPEGHEQARQALAALPGVGHKTVALVLLFDLRRPAMPVDGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHGRDTCRSKHPLCPQCPLREFCPSASIFELGEA 328
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UOB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UOB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UOB)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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4unf CRYSTAL STRUCTURE OF DEINOCOCCUS RADIODURANS ENDONUCLEASE III-1