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(-) Description

Title :  STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (L37A MUTANT WITH BUTYRATE BOUND)
 
Authors :  C. Sayer, M. N. Isupov, E. Bonch-Osmolovskaya, J. A. Littlechild
Date :  24 Mar 15  (Deposition) - 10 Jun 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.08
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Alpha Beta Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Sayer, M. N. Isupov, E. Bonch-Osmolovskaya, J. A. Littlechild
Structural Studies Of A Thermophilic Esterase From A New Planctomycetes Species, Thermogutta Terrifontis.
Febs J. V. 282 2846 2015
PubMed-ID: 26011036  |  Reference-DOI: 10.1111/FEBS.13326

(-) Compounds

Molecule 1 - ESTERASE
    Chains: A
    EC Number: 3.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ARCTICEXPRESS RIL
    Expression System Vector: PLATE31
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PLANCTOMYCETES BACTERIUM R1
    Organism Taxid: 1331910

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1BUA3Ligand/IonBUTANOIC ACID
2CAD1Ligand/IonCACODYLIC ACID
3PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:101 , TYR A:105 , ARG A:139 , ILE A:224 , BUA A:1281 , HOH A:2126 , HOH A:2317 , HOH A:2318 , HOH A:2319BINDING SITE FOR RESIDUE CAD A1280
2AC2SOFTWAREGLY A:34 , PHE A:35 , SER A:101 , MET A:102 , HIS A:250 , CAD A:1280 , HOH A:2320BINDING SITE FOR RESIDUE BUA A1281
3AC3SOFTWAREGLU A:144 , ARG A:147 , GLN A:220 , VAL A:244 , HOH A:2170 , HOH A:2175 , HOH A:2323BINDING SITE FOR RESIDUE BUA A1283
4AC4SOFTWAREPRO A:160 , GLU A:165 , PHE A:168 , HOH A:2197 , HOH A:2324BINDING SITE FOR RESIDUE BUA A1284
5AC5SOFTWARELYS A:136 , GLU A:199 , ARG A:200 , HOH A:2150BINDING SITE FOR RESIDUE PGE A1282

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UHF)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:12 -Pro A:13
2Phe A:35 -Pro A:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UHF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UHF)

(-) Exons   (0, 0)

(no "Exon" information available for 4UHF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee....eeeee.....hhhhhhhhhhhhh...eeeee...............hhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhh...eeeeee......hhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhf A   2 AQRVKITTTATPGEIELAFEDTGTGLPVLLVHGFPLDRTMWKAQREELCDEFRVIVPDLRGFGESQVIPGVATMEAMADDLAGLCNHLGLTGKIVLGGLSMGGYVAFAFARKYRDRLAGLILCDTRARPDSPEAKENRRRVAERVRREGPGFIAEEMIPRLCCESTFRNHPEVIEKIRQMILSAPPEGVAAAALGMAERPDSTDLLPALSCPTLVLVGQFDAISPPEEMEAMARTIPQSQFVVIPDAGHLPPMEQPERVTQAIREWLRKVHTEAGHHH 279
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UHF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UHF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UHF)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4UHF)

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  Cis Peptide Bonds
    Phe A:35 - Pro A:36   [ RasMol ]  
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  4uhf
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  A0A0M3KKY6_9 | A0A0M3KKY6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0M3KKY6_9 | A0A0M3KKY6: 4uhc 4uhd 4uhe

(-) Related Entries Specified in the PDB File

4uhc STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (NATIVE)
4uhd STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (ACETATE BOUND)
4uhe STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (MALATE BOUND)
4uhh STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (CACODYLATE COMPLEX)