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(-) Description

Title :  STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (ACETATE BOUND)
 
Authors :  C. Sayer, M. N. Isupov, E. Bonch-Osmolovskaya, J. A. Littlechild
Date :  24 Mar 15  (Deposition) - 10 Jun 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Alpha Beta Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Sayer, M. N. Isupov, E. Bonch-Osmolovskaya, J. A. Littlechild
Structural Studies Of A Thermophilic Esterase From A New Planctomycetes Species, Thermogutta Terrifontis.
Febs J. V. 282 2846 2015
PubMed-ID: 26011036  |  Reference-DOI: 10.1111/FEBS.13326

(-) Compounds

Molecule 1 - ESTERASE
    Chains: A
    EC Number: 3.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ARCTICEXPRESS (DE3)RIL
    Expression System Taxid: 562
    Expression System Vector: PLATE31
    Expression System Vector Type: PLASMID
    Organism Scientific: PLANCTOMYCETES BACTERIUM R1
    Organism Taxid: 1331910

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3MG1Ligand/IonMAGNESIUM ION
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:43 , ARG A:46 , HOH A:2044 , HOH A:2045 , HOH A:2075BINDING SITE FOR RESIDUE CL A1276
2AC2SOFTWAREALA A:234 , ILE A:237 , SER A:240 , HOH A:2316 , HOH A:2317 , HOH A:2326BINDING SITE FOR RESIDUE MG A1277
3AC3SOFTWAREGLY A:34 , PHE A:35 , SER A:101 , MET A:102 , HIS A:250 , ACT A:1279 , HOH A:2362 , HOH A:2363BINDING SITE FOR RESIDUE ACT A1278
4AC4SOFTWARESER A:101 , TYR A:105 , ARG A:139 , ACT A:1278 , HOH A:2178 , HOH A:2362BINDING SITE FOR RESIDUE ACT A1279
5AC5SOFTWARESER A:132 , PRO A:133 , PRO A:160 , ARG A:161 , CYS A:163 , CYS A:164 , PHE A:221 , ALA A:223 , HOH A:2188 , HOH A:2193 , HOH A:2233 , HOH A:2364BINDING SITE FOR RESIDUE PEG A1280
6AC6SOFTWAREGLN A:3 , GLU A:21 , ASP A:22 , HOH A:2050 , HOH A:2051 , HOH A:2052BINDING SITE FOR RESIDUE PEG A1281

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UHD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:12 -Pro A:13
2Phe A:35 -Pro A:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UHD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UHD)

(-) Exons   (0, 0)

(no "Exon" information available for 4UHD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeee....eeeee.....hhhhhhhhhhhhh...eeeee...............hhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhh...eeeeee......hhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhd A   2 AQRVKITTTATPGEIELAFEDTGTGLPVLLVHGFPLDRTMWKAQREELCDEFRVIVPDLRGFGESQVIPGVATMEAMADDLAGLCNHLGLTGKIVLGGLSMGGYVAFAFARKYRDRLAGLILCDTRARPDSPEAKENRRRVAERVRREGPGFIAEEMIPRLCCESTFRNHPEVIEKIRQMILSAPPEGVAAAALGMAERPDSTDLLPALSCPTLVLVGQFDAISPPEEMEAMARTIPQSQFVVIPDAGHLPPMEQPERVTQAIREWLRKVHTEA 275
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UHD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UHD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UHD)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4UHD)

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  Cis Peptide Bonds
    Phe A:35 - Pro A:36   [ RasMol ]  
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  A0A0M3KKY6_9 | A0A0M3KKY6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0M3KKY6_9 | A0A0M3KKY6: 4uhc 4uhe 4uhf

(-) Related Entries Specified in the PDB File

4uhc STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (NATIVE)
4uhe STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (MALATE BOUND)
4uhf STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (L37A MUTANT WITH BUTYRATE BOUND)
4uhh STRUCTURAL STUDIES OF A THERMOPHILIC ESTERASE FROM THERMOGUTTA TERRIFONTIS (CACODYLATE COMPLEX)