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(-) Description

Title :  STRUCTURAL BASIS FOR TARGETING AND ELONGATION ARREST OF BACILLUS SIGNAL RECOGNITION PARTICLE
 
Authors :  B. Beckert, A. Kedrov, D. Sohmen, G. Kempf, K. Wild, I. Sinning, H. Stahl D. N. Wilson, R. Beckmann
Date :  15 Dec 14  (Deposition) - 09 Sep 15  (Release) - 21 Oct 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  7.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Signal Recognition Particle (Srp), Stalled-Ribosome, Translation, Translocation, Mifm Stalling (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Beckert, A. Kedrov, D. Sohmen, G. Kempf, K. Wild, I. Sinning, H. Stahlberg, D. N. Wilson, R. Beckmann
Translational Arrest By A Prokaryotic Signal Recognition Particle Is Mediated By Rna Interactions.
Nat. Struct. Mol. Biol. V. 22 767 2015
PubMed-ID: 26344568  |  Reference-DOI: 10.1038/NSMB.3086

(-) Compounds

Molecule 1 - 6S RNA
    Chains: A
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
 
Molecule 2 - FTSQ SIGNAL SEQUENCE
    Chains: B
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
 
Molecule 3 - SIGNAL RECOGNITION PARTICLE PROTEIN
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PETRSF
    Expression System Vector Type: PLASMID
    Fragment: M DOMAIN
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Taxid: 224308
    Synonym: FIFTY-FOUR HOMOLOG, FFH

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UE4)

(-) Sites  (0, 0)

(no "Site" information available for 4UE4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UE4)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Glu C:349 -Leu C:350
2Gly C:358 -Lys C:359
3Leu C:363 -Lys C:364
4Lys C:364 -Asn C:365
5Asn C:365 -Ile C:366
6Gln C:367 -Val C:368
7Asp C:369 -Glu C:370

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UE4)

(-) Exons   (0, 0)

(no "Exon" information available for 4UE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:RNA  Length:266
                                                                                                                                                                                                                                                                                                          
                 4ue4 A   4 GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGUUUACUUUAAGGCCUGCCUUAAGUAAGUGGUGUUGACGUUUGGGUCCUGCGCAAUGGGAAUUCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGAAACCUCUCAUGUGCCGCAGGGUUGCCUGGGCCGAGCUAACUGCUUAAGUAACGCUAGGGUAGCGAAUCGACAGAAGGUGCACGGU 269
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263      


Chain B from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4ue4 B  10 LFLLTVCTTVLVSGWVVLGWME  31
                                    19        29  


Chain C from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4ue4 C 330 TLDDFLEQLGQVRNMGPLDELLQMMPGAGKMKGLKNIQVDEKQLNHVEAIIKSMTVLEKEQPDIINASRRKRIAKGSGTSVQEVNRLLKQFDEMKKMMKQMT 431
                                   339       349       359       369       379       389       399       409       419       429
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UE4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UE4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UE4)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn C:365 - Ile C:366   [ RasMol ]  
    Asp C:369 - Glu C:370   [ RasMol ]  
    Gln C:367 - Val C:368   [ RasMol ]  
    Glu C:349 - Leu C:350   [ RasMol ]  
    Gly C:358 - Lys C:359   [ RasMol ]  
    Leu C:363 - Lys C:364   [ RasMol ]  
    Lys C:364 - Asn C:365   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSQ_ECOLI | P06136: 2vh1 4v6m

(-) Related Entries Specified in the PDB File

4ue5 STRUCTURAL BASIS FOR TARGETING AND ELONGATION ARREST OF BACILLUS SIGNAL RECOGNITION PARTICLE RELATED ID: EMD-2843 RELATED DB: EMDB