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(-) Description

Title :  COMPLEX STRUCTURE OF BRCA1 BRCT WITH SINGLY PHOSPHO ABRAXAS
 
Authors :  D. Badgujar, M. V. Hosur, A. K. Varma
Date :  23 Jul 14  (Deposition) - 26 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.51
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C,F  (1x)
Keywords :  Complex, Phosphospecific, Antitumor Protein-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Badgujar, M. V. Hosur, A. K. Varma
Complex Structure Of Brca1 Brct With Singly Phospho Abraxas
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN
    ChainsA, B, C
    EC Number6.3.2.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidGST
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    FragmentBRCT (UNP RESIDUES 1646-1859)
    GeneBRCA1, RNF53
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRING FINGER PROTEIN 53
 
Molecule 2 - BRCA1-A COMPLEX SUBUNIT ABRAXAS
    ChainsD, E, F
    EngineeredYES
    FragmentUNP RESIDUES 399-409
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCOILED-COIL DOMAIN-CONTAINING PROTEIN 98,PROTEIN FAM175A
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A  D  
Biological Unit 2 (1x) B  E 
Biological Unit 3 (1x)  C  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1SEP3Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SEP1Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 4U4A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4U4A)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Gly A:1770 -Pro A:1771
2Lys B:1648 -Arg B:1649
3Gly B:1770 -Pro B:1771
4Lys C:1648 -Arg C:1649
5Gly C:1770 -Pro C:1771
6Tyr D:403 -Ser D:404
7Gly E:399 -Phe E:400
8Gly E:401 -Glu E:402
9Tyr E:403 -Ser E:404
10Tyr F:403 -Ser F:404

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U4A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U4A)

(-) Exons   (0, 0)

(no "Exon" information available for 4U4A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhhh...........eeeeee......ee..hhhhhhhhhhh.eeeehhhhhhhhhhh...........ee.......hhhhhhhhh........eeeee.......hhhhhhhhhhh...eee............eeeeeehhhhh...hhhhhhhhhh...eeehhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4u4a A 1646 VNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIP 1859
                                  1655      1665      1675      1685      1695      1705      1715      1725      1735      1745      1755      1765      1775      1785      1795      1805      1815      1825      1835      1845      1855    

Chain B from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..hhhhhhhhhhhhhhh...........eeeeee......ee..hhhhhhhhhhh.eeeehhhhhhhhhhh...........ee.......hhhhhhhhh........eeeee.......hhhhhhhhhhh...eee............eeeeeehhhhh...hhhhhhhhhh...eeehhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4u4a B 1646 VNKRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIP 1859
                                  1655      1665      1675      1685      1695      1705      1715      1725      1735      1745      1755      1765      1775      1785      1795      1805      1815      1825      1835      1845      1855    

Chain C from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh.............eeee......ee..hhhhhhhhhhh.eeeehhhhhhhhhhh...........ee.......hhhhhhhhh........eeeee.......hhhhhhhhhhh...eee............eeeeeehhhhh...hhhhhhhhhh...eeehhhhhhhhhh....hhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4u4a C 1648 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGDVVNGRNHQGPKRARESQDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTYLIPQIP 1859
                                  1657      1667      1677      1687      1697      1707      1717      1727      1737      1747      1757      1767      1777      1787      1797      1807      1817      1827      1837      1847      1857  

Chain D from PDB  Type:PROTEIN  Length:9
                                          
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                4u4a D  401 GEYSRsPTF  409
                                 |   
                               406-SEP

Chain E from PDB  Type:PROTEIN  Length:11
                                            
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                4u4a E  399 GFGEYSRsPTF  409
                                   408 
                                 406-SEP

Chain F from PDB  Type:PROTEIN  Length:7
                                        
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                4u4a F  403 YSRsPTF  409
                               |   
                               |   
                             406-SEP

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U4A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U4A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U4A)

(-) Gene Ontology  (101, 112)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:1770 - Pro A:1771   [ RasMol ]  
    Gly B:1770 - Pro B:1771   [ RasMol ]  
    Gly C:1770 - Pro C:1771   [ RasMol ]  
    Gly E:399 - Phe E:400   [ RasMol ]  
    Gly E:401 - Glu E:402   [ RasMol ]  
    Lys B:1648 - Arg B:1649   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRCA1_HUMAN | P383981jm7 1jnx 1n5o 1oqa 1t15 1t29 1t2u 1t2v 1y98 2ing 3coj 3k0h 3k0k 3k15 3k16 3pxa 3pxb 3pxc 3pxd 3pxe 4ifi 4igk 4jlu 4ofb 4y18 4y2g
        F175A_HUMAN | Q6UWZ74jlu 4y18 4y2g

(-) Related Entries Specified in the PDB File

4jlu DOUBLY PHOSPHO COMPLEX WITH BRCA1 BRCT